Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AC233992.3-201ENST00000607491 485 ntBASIC20.4■□□□□ 0.86
SLC28A1O00337 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SLC28A1O00337 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
SLC28A1O00337 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SLC28A1O00337 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SLC28A1O00337 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.39■□□□□ 0.86
SLC28A1O00337 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
SLC28A1O00337 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC28A1O00337 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SLC28A1O00337 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SLC28A1O00337 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC28A1O00337 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC28A1O00337 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC28A1O00337 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC28A1O00337 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.38■□□□□ 0.85
SLC28A1O00337 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC28A1O00337 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC28A1O00337 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SLC28A1O00337 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.38■□□□□ 0.85
SLC28A1O00337 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.38■□□□□ 0.85
SLC28A1O00337 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SLC28A1O00337 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SLC28A1O00337 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC28A1O00337 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.38■□□□□ 0.85
SLC28A1O00337 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.38■□□□□ 0.85
SLC28A1O00337 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.38■□□□□ 0.85
SLC28A1O00337 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC28A1O00337 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SLC28A1O00337 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC28A1O00337 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC28A1O00337 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC28A1O00337 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.37■□□□□ 0.85
SLC28A1O00337 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC28A1O00337 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC28A1O00337 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC28A1O00337 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC28A1O00337 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.37■□□□□ 0.85
SLC28A1O00337 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.37■□□□□ 0.85
SLC28A1O00337 AC126544.1-201ENST00000580842 1059 ntBASIC20.37■□□□□ 0.85
SLC28A1O00337 AL136162.1-201ENST00000607711 1078 ntBASIC20.37■□□□□ 0.85
SLC28A1O00337 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
SLC28A1O00337 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
SLC28A1O00337 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC28A1O00337 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.37■□□□□ 0.85
SLC28A1O00337 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SLC28A1O00337 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SLC28A1O00337 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 AL049796.1-201ENST00000565336 1766 ntBASIC20.36■□□□□ 0.85
SLC28A1O00337 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.36■□□□□ 0.85
SLC28A1O00337 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
SLC28A1O00337 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 AC024257.2-201ENST00000549699 147 ntBASIC20.36■□□□□ 0.85
SLC28A1O00337 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
SLC28A1O00337 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.36■□□□□ 0.85
SLC28A1O00337 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SLC28A1O00337 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SLC28A1O00337 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
SLC28A1O00337 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC28A1O00337 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC28A1O00337 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SLC28A1O00337 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.35■□□□□ 0.85
SLC28A1O00337 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC28A1O00337 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC28A1O00337 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC28A1O00337 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC28A1O00337 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SLC28A1O00337 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.35■□□□□ 0.85
SLC28A1O00337 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.35■□□□□ 0.85
SLC28A1O00337 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.35■□□□□ 0.85
SLC28A1O00337 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
SLC28A1O00337 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.35■□□□□ 0.85
SLC28A1O00337 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC28A1O00337 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
SLC28A1O00337 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC28A1O00337 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.35■□□□□ 0.85
SLC28A1O00337 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SLC28A1O00337 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC28A1O00337 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 AC135279.3-201ENST00000610945 1311 ntBASIC20.34■□□□□ 0.85
SLC28A1O00337 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.34■□□□□ 0.85
SLC28A1O00337 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 IGHV3-19-201ENST00000521488 291 ntBASIC20.34■□□□□ 0.85
SLC28A1O00337 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC28A1O00337 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms