Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.54■□□□□ 0.72
CPSF4LA6NMK7 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CPSF4LA6NMK7 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CPSF4LA6NMK7 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CPSF4LA6NMK7 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 AC003102.1-202ENST00000563394 1796 ntBASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 UNC93B3-201ENST00000308076 687 ntBASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 MIR4767-201ENST00000582827 78 ntBASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
CPSF4LA6NMK7 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
CPSF4LA6NMK7 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
CPSF4LA6NMK7 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.52■□□□□ 0.71
CPSF4LA6NMK7 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
CPSF4LA6NMK7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 AC131212.1-201ENST00000613771 668 ntBASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4LA6NMK7 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4LA6NMK7 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 BX842568.3-201ENST00000418104 571 ntBASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.49■□□□□ 0.71
CPSF4LA6NMK7 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 AC024257.2-201ENST00000549699 147 ntBASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 AL136162.1-201ENST00000607711 1078 ntBASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms