Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.59■■□□□ 1.05
TCRBV7S3A2A0A539 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.59■■□□□ 1.05
TCRBV7S3A2A0A539 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.59■■□□□ 1.05
TCRBV7S3A2A0A539 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TCRBV7S3A2A0A539 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
TCRBV7S3A2A0A539 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TCRBV7S3A2A0A539 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TCRBV7S3A2A0A539 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TCRBV7S3A2A0A539 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.59■■□□□ 1.05
TCRBV7S3A2A0A539 AL136162.1-201ENST00000607711 1078 ntBASIC21.59■■□□□ 1.05
TCRBV7S3A2A0A539 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TCRBV7S3A2A0A539 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.59■■□□□ 1.05
TCRBV7S3A2A0A539 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TCRBV7S3A2A0A539 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TCRBV7S3A2A0A539 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TCRBV7S3A2A0A539 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
TCRBV7S3A2A0A539 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TCRBV7S3A2A0A539 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.58■■□□□ 1.05
TCRBV7S3A2A0A539 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TCRBV7S3A2A0A539 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TCRBV7S3A2A0A539 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.58■■□□□ 1.05
TCRBV7S3A2A0A539 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.58■■□□□ 1.05
TCRBV7S3A2A0A539 AC233992.3-201ENST00000607491 485 ntBASIC21.58■■□□□ 1.05
TCRBV7S3A2A0A539 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TCRBV7S3A2A0A539 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.58■■□□□ 1.04
TCRBV7S3A2A0A539 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
TCRBV7S3A2A0A539 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
TCRBV7S3A2A0A539 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
TCRBV7S3A2A0A539 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
TCRBV7S3A2A0A539 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 AC073130.3-201ENST00000624389 2278 ntBASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 AL049796.1-201ENST00000565336 1766 ntBASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 AC131212.1-201ENST00000613771 668 ntBASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
TCRBV7S3A2A0A539 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
TCRBV7S3A2A0A539 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TCRBV7S3A2A0A539 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.56■■□□□ 1.04
TCRBV7S3A2A0A539 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TCRBV7S3A2A0A539 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TCRBV7S3A2A0A539 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.56■■□□□ 1.04
TCRBV7S3A2A0A539 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.56■■□□□ 1.04
TCRBV7S3A2A0A539 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
TCRBV7S3A2A0A539 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
TCRBV7S3A2A0A539 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.56■■□□□ 1.04
TCRBV7S3A2A0A539 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
TCRBV7S3A2A0A539 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TCRBV7S3A2A0A539 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms