Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC163A0A0D9SF12 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC163A0A0D9SF12 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC163A0A0D9SF12 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC163A0A0D9SF12 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC163A0A0D9SF12 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.17■□□□□ 0.98
CCDC163A0A0D9SF12 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC163A0A0D9SF12 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC163A0A0D9SF12 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC163A0A0D9SF12 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC163A0A0D9SF12 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 AC073648.6-201ENST00000641589 218 ntBASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC163A0A0D9SF12 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC163A0A0D9SF12 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC163A0A0D9SF12 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC163A0A0D9SF12 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC163A0A0D9SF12 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 LSM12P1-201ENST00000411836 588 ntBASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 AC008550.1-201ENST00000511500 884 ntBASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC163A0A0D9SF12 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC163A0A0D9SF12 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC163A0A0D9SF12 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CCDC163A0A0D9SF12 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.13■□□□□ 0.97
CCDC163A0A0D9SF12 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC163A0A0D9SF12 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC163A0A0D9SF12 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC163A0A0D9SF12 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC163A0A0D9SF12 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC163A0A0D9SF12 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC163A0A0D9SF12 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC163A0A0D9SF12 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC163A0A0D9SF12 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC163A0A0D9SF12 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC163A0A0D9SF12 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC163A0A0D9SF12 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC163A0A0D9SF12 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.11■□□□□ 0.97
CCDC163A0A0D9SF12 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC163A0A0D9SF12 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.11■□□□□ 0.97
CCDC163A0A0D9SF12 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC163A0A0D9SF12 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.11■□□□□ 0.97
CCDC163A0A0D9SF12 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CCDC163A0A0D9SF12 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.11■□□□□ 0.97
CCDC163A0A0D9SF12 AC100791.3-201ENST00000617619 330 ntBASIC21.11■□□□□ 0.97
CCDC163A0A0D9SF12 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC163A0A0D9SF12 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.11■□□□□ 0.97
CCDC163A0A0D9SF12 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms