Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 FASN-205ENST00000584610 857 ntTSL 220.61■□□□□ 0.893e-6■■■■□ 20.7
SF3B1O75533 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.883e-6■■■■□ 20.7
SF3B1O75533 FASN-202ENST00000578424 951 ntTSL 219.98■□□□□ 0.793e-6■■■■□ 20.7
SF3B1O75533 FLOT1-212ENST00000487376 1583 ntTSL 519.93■□□□□ 0.783e-6■■■■□ 20.7
SF3B1O75533 RPL36-206ENST00000582380 542 ntTSL 519.36■□□□□ 0.693e-6■■■■□ 20.7
SF3B1O75533 FLNA-211ENST00000465144 398 ntTSL 219.27■□□□□ 0.683e-6■■■■□ 20.7
SF3B1O75533 SGMS1-204ENST00000492601 625 ntTSL 1 (best)18.99■□□□□ 0.633e-6■■■■□ 20.7
SF3B1O75533 FASN-204ENST00000580382 681 ntTSL 318.79■□□□□ 0.63e-6■■■■□ 20.7
SF3B1O75533 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.553e-6■■■■□ 20.7
SF3B1O75533 ACAP3-204ENST00000379037 492 ntTSL 318.41■□□□□ 0.543e-6■■■■□ 20.7
SF3B1O75533 ACAP3-209ENST00000476572 819 ntTSL 517.21■□□□□ 0.343e-6■■■■□ 20.7
SF3B1O75533 FLOT1-209ENST00000476729 562 ntTSL 216.9■□□□□ 0.33e-6■■■■□ 20.7
SF3B1O75533 YPEL5-206ENST00000470120 653 ntTSL 216.62■□□□□ 0.253e-6■■■■□ 20.7
SF3B1O75533 TRAF4-212ENST00000498540 748 ntTSL 316.32■□□□□ 0.23e-6■■■■□ 20.7
SF3B1O75533 TRAF4-210ENST00000475329 544 ntTSL 314.44□□□□□ -0.13e-6■■■■□ 20.7
SF3B1O75533 TRAF4-202ENST00000262396 683 ntTSL 1 (best) BASIC13.53□□□□□ -0.243e-6■■■■□ 20.7
SF3B1O75533 DHX36-203ENST00000460695 2306 ntTSL 211.96□□□□□ -0.493e-6■■■■□ 20.7
SF3B1O75533 YPEL5-203ENST00000379520 2560 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.693e-6■■■■□ 20.7
SF3B1O75533 RIOK3-202ENST00000577250 685 ntTSL 310.6□□□□□ -0.713e-6■■■■□ 20.7
SF3B1O75533 CD47-204ENST00000471694 6796 ntTSL 1 (best)8.92□□□□□ -0.983e-6■■■■□ 20.7
SF3B1O75533 RIOK3-204ENST00000581220 2384 ntTSL 28.78□□□□□ -13e-6■■■■□ 20.7
SF3B1O75533 DNM2-216ENST00000591118 576 ntTSL 48.54□□□□□ -1.043e-6■■■■□ 20.7
SF3B1O75533 YPEL5-209ENST00000492439 787 ntTSL 38.21□□□□□ -1.13e-6■■■■□ 20.7
SF3B1O75533 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.23e-6■■■■□ 20.7
SF3B1O75533 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.33e-6■■■■□ 20.7
SF3B1O75533 ZNF512-206ENST00000488055 2465 ntTSL 26.81□□□□□ -1.323e-6■■■■□ 20.7
SF3B1O75533 DHX36-208ENST00000479934 530 ntTSL 26.8□□□□□ -1.323e-6■■■■□ 20.7
SF3B1O75533 YPEL5-208ENST00000490211 653 ntTSL 56.5□□□□□ -1.373e-6■■■■□ 20.7
SF3B1O75533 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.413e-6■■■■□ 20.7
SF3B1O75533 CD47-205ENST00000517766 538 ntTSL 26.04□□□□□ -1.443e-6■■■■□ 20.7
SF3B1O75533 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.53e-6■■■■□ 20.7
SF3B1O75533 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.523e-6■■■■□ 20.7
SF3B1O75533 USP48-211ENST00000526044 549 ntTSL 34.64□□□□□ -1.673e-6■■■■□ 20.7
SF3B1O75533 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.753e-6■■■■□ 20.7
SF3B1O75533 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.1□□□□□ -1.753e-6■■■■□ 20.7
SF3B1O75533 CCNT2-207ENST00000452521 638 ntTSL 33.87□□□□□ -1.793e-6■■■■□ 20.7
SF3B1O75533 COPA-206ENST00000545266 574 ntTSL 23.81□□□□□ -1.83e-6■■■■□ 20.7
SF3B1O75533 MTBP-207ENST00000522449 3375 ntTSL 1 (best)3.69□□□□□ -1.823e-6■■■■□ 20.7
SF3B1O75533 USP48-209ENST00000487880 524 ntTSL 33.58□□□□□ -1.843e-6■■■■□ 20.7
SF3B1O75533 USP48-215ENST00000534705 566 ntTSL 42.96□□□□□ -1.933e-6■■■■□ 20.7
SF3B1O75533 CD47-203ENST00000398258 469 ntTSL 32.12□□□□□ -2.073e-6■■■■□ 20.7
SF3B1O75533 CCNT2-205ENST00000438691 632 ntTSL 21.74□□□□□ -2.133e-6■■■■□ 20.7
SF3B1O75533 RNA5SP259-201ENST00000365541 109 ntBASIC1.22□□□□□ -2.213e-6■■■■□ 20.7
SF3B1O75533 HMGN2-202ENST00000460563 1045 ntTSL 511.94□□□□□ -0.52e-7■■■■□ 20.7
SF3B1O75533 HMGN2-204ENST00000464888 565 ntTSL 211.56□□□□□ -0.562e-7■■■■□ 20.7
SF3B1O75533 HMGN2-203ENST00000463817 853 ntTSL 29.22□□□□□ -0.932e-7■■■■□ 20.7
SF3B1O75533 HMGN2-208ENST00000479815 1030 ntTSL 59.22□□□□□ -0.932e-7■■■■□ 20.7
SF3B1O75533 HMGN2-206ENST00000467700 932 ntTSL 28.06□□□□□ -1.122e-7■■■■□ 20.7
SF3B1O75533 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.22e-7■■■■□ 20.7
SF3B1O75533 HMGN2-207ENST00000468388 320 ntTSL 37.55□□□□□ -1.22e-7■■■■□ 20.7
SF3B1O75533 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.592e-7■■■■□ 20.7
SF3B1O75533 YY1AP1-218ENST00000454523 810 ntAPPRIS ALT2 TSL 218.47■□□□□ 0.552e-7■■■■□ 20.6
SF3B1O75533 YY1AP1-220ENST00000476027 927 ntTSL 315.02■□□□□ -02e-7■■■■□ 20.6
SF3B1O75533 HSP90AA1-210ENST00000560130 488 ntTSL 23.56□□□□□ -1.844e-6■■■■□ 20.6
SF3B1O75533 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.961e-6■■■■□ 20.6
SF3B1O75533 TBL1XR1-229ENST00000636912 100 ntTSL 5-0.09□□□□□ -2.422e-6■■■■□ 20.5
SF3B1O75533 AC069277.1-203ENST00000414603 517 ntTSL 310.46□□□□□ -0.734e-6■■■■□ 20.5
SF3B1O75533 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC6.97□□□□□ -1.292e-6■■■■□ 20.5
SF3B1O75533 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.422e-6■■■■□ 20.5
SF3B1O75533 MAN2A2-206ENST00000558290 1049 ntTSL 519.25■□□□□ 0.674e-6■■■■□ 20.5
SF3B1O75533 MAN2A2-223ENST00000560534 361 ntTSL 518.02■□□□□ 0.484e-6■■■■□ 20.5
SF3B1O75533 MAN2A2-210ENST00000558853 624 ntTSL 317.47■□□□□ 0.394e-6■■■■□ 20.5
SF3B1O75533 MAN2A2-218ENST00000559999 529 ntTSL 416.42■□□□□ 0.224e-6■■■■□ 20.5
SF3B1O75533 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.071e-11■■■■□ 20.4
SF3B1O75533 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.11e-11■■■■□ 20.4
SF3B1O75533 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC14.19□□□□□ -0.141e-11■■■■□ 20.4
SF3B1O75533 RPL15-210ENST00000456530 2835 ntTSL 1 (best) BASIC11.86□□□□□ -0.511e-11■■■■□ 20.4
SF3B1O75533 RPL15-204ENST00000413699 2053 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.531e-11■■■■□ 20.4
SF3B1O75533 RPL15-209ENST00000436146 1990 ntTSL 56.9□□□□□ -1.31e-11■■■■□ 20.4
SF3B1O75533 EIF1-204ENST00000469308 815 ntTSL 224.77■■□□□ 1.563e-6■■■■□ 20.4
SF3B1O75533 EIF1-202ENST00000462917 2170 ntTSL 1 (best)19.09■□□□□ 0.653e-6■■■■□ 20.4
SF3B1O75533 EIF1-201ENST00000310837 1120 ntTSL 1 (best)9.66□□□□□ -0.863e-6■■■■□ 20.4
SF3B1O75533 EIF1-207ENST00000591776 797 ntTSL 4 BASIC8.07□□□□□ -1.123e-6■■■■□ 20.4
SF3B1O75533 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.283e-6■■■■□ 20.4
SF3B1O75533 EIF1-205ENST00000482111 1428 ntTSL 26.17□□□□□ -1.423e-6■■■■□ 20.4
SF3B1O75533 SLC25A37-211ENST00000523883 3651 ntTSL 210.31□□□□□ -0.767e-8■■■■□ 20.4
SF3B1O75533 WDR60-203ENST00000444851 2769 ntTSL 1 (best)13.96□□□□□ -0.184e-6■■■■□ 20.4
SF3B1O75533 WDR60-205ENST00000467220 5410 ntTSL 213.32□□□□□ -0.284e-6■■■■□ 20.4
SF3B1O75533 DDX46-202ENST00000452510 5689 ntTSL 1 (best) BASIC10.56□□□□□ -0.727e-6■■■■□ 20.4
SF3B1O75533 DDX46-207ENST00000507392 3565 ntTSL 28.51□□□□□ -1.057e-6■■■■□ 20.4
SF3B1O75533 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.187e-6■■■■□ 20.4
SF3B1O75533 ACIN1-221ENST00000557432 642 ntTSL 314.04□□□□□ -0.166e-6■■■■□ 20.4
SF3B1O75533 ACIN1-217ENST00000555566 734 ntTSL 312.96□□□□□ -0.336e-6■■■■□ 20.4
SF3B1O75533 ACIN1-214ENST00000555352 579 ntTSL 410.33□□□□□ -0.766e-6■■■■□ 20.4
SF3B1O75533 ACIN1-208ENST00000553721 610 ntTSL 39.56□□□□□ -0.886e-6■■■■□ 20.4
SF3B1O75533 ACIN1-207ENST00000553501 716 ntTSL 29.43□□□□□ -0.96e-6■■■■□ 20.4
SF3B1O75533 ACIN1-212ENST00000554979 366 ntTSL 29.2□□□□□ -0.946e-6■■■■□ 20.4
SF3B1O75533 GAS5-203ENST00000416952 799 ntTSL 29.51□□□□□ -0.893e-7■■■■□ 20.4
SF3B1O75533 GAS5-226ENST00000455838 632 ntTSL 28.83□□□□□ -13e-7■■■■□ 20.4
SF3B1O75533 GAS5-211ENST00000432536 959 ntTSL 2 BASIC7.94□□□□□ -1.143e-7■■■■□ 20.4
SF3B1O75533 GAS5-227ENST00000456293 583 ntTSL 37.85□□□□□ -1.153e-7■■■■□ 20.4
SF3B1O75533 BRD4-204ENST00000594066 587 ntTSL 313.18□□□□□ -0.31e-7■■■■□ 20.3
SF3B1O75533 FUS-209ENST00000566605 1787 ntTSL 1 (best)26.85■■□□□ 1.896e-7■■■■□ 20.3
SF3B1O75533 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.736e-7■■■■□ 20.3
SF3B1O75533 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.466e-7■■■■□ 20.3
SF3B1O75533 FUS-206ENST00000487509 4920 ntTSL 214.02□□□□□ -0.176e-7■■■■□ 20.3
SF3B1O75533 ORC4-211ENST00000490200 563 ntTSL 421.03■□□□□ 0.961e-6■■■■□ 20.2
SF3B1O75533 ORC4-204ENST00000440042 552 ntTSL 320.74■□□□□ 0.911e-6■■■■□ 20.2
SF3B1O75533 ORC4-206ENST00000461711 528 ntTSL 419.03■□□□□ 0.641e-6■■■■□ 20.2
SF3B1O75533 ORC4-205ENST00000457954 647 ntTSL 412.61□□□□□ -0.391e-6■■■■□ 20.2
Retrieved 100 of 46,956 protein–RNA pairs in 4638.5 ms