RNA–Protein interactions for RNA: ENST00000398258.7

CD47-203, Transcript of CD47 molecule, humanhuman

TSL 3

Gene CD47, Length 469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-203ENST00000398258 AEBP2Q6ZN18 517 aaPredicted RBP23.24■■□□□ 1.31
CD47-203ENST00000398258 CHIC1Q5VXU3 224 aa21.51■■□□□ 1.03
CD47-203ENST00000398258 POTEDQ86YR6 584 aa19.91■□□□□ 0.78
CD47-203ENST00000398258 SENP3Q9H4L4 574 aaPredicted RBP19.88■□□□□ 0.77
CD47-203ENST00000398258 PHF23Q9BUL5 403 aaPredicted RBP19.5■□□□□ 0.71
CD47-203ENST00000398258 FOXD1Q16676 465 aa18.79■□□□□ 0.6
CD47-203ENST00000398258 MSH5O43196 834 aa17.97■□□□□ 0.47
CD47-203ENST00000398258 PIAS4Q8N2W9 510 aaPredicted RBP17.15■□□□□ 0.34
CD47-203ENST00000398258 PPP6R1Q9UPN7 881 aa16.61■□□□□ 0.25
CD47-203ENST00000398258 ADRA2BP18089 450 aa16.42■□□□□ 0.22
CD47-203ENST00000398258 CACNB1Q02641 598 aaPredicted RBP16.25■□□□□ 0.19
CD47-203ENST00000398258 PLPPR3Q6T4P5 718 aa16.14■□□□□ 0.17
CD47-203ENST00000398258 DMRT2Q9Y5R5 561 aa15.6■□□□□ 0.09
CD47-203ENST00000398258 MAPK8IP2Q13387 824 aaPredicted RBP15.52■□□□□ 0.08
CD47-203ENST00000398258 POTEHQ6S545 545 aa15.29■□□□□ 0.04
CD47-203ENST00000398258 RNF39Q9H2S5 420 aa15.29■□□□□ 0.04
CD47-203ENST00000398258 DCAF8L1A6NGE4 600 aa14.95□□□□□ -0.02
CD47-203ENST00000398258 C1QBPQ07021 282 aaKnown RBP14.93□□□□□ -0.02
CD47-203ENST00000398258 SCAF1Q9H7N4 1312 aaKnown RBP14.87□□□□□ -0.03
CD47-203ENST00000398258 HOXD11P31277 338 aaPredicted RBP14.53□□□□□ -0.08
CD47-203ENST00000398258 DNAJC5BQ9UF47 199 aa14.24□□□□□ -0.13
CD47-203ENST00000398258 PPP4R3CPQ6ZMV5 832 aa14.17□□□□□ -0.14
CD47-203ENST00000398258 RNF216Q9NWF9 866 aaPredicted RBP14.02□□□□□ -0.17
CD47-203ENST00000398258 CNKSR2Q8WXI2 1034 aa13.93□□□□□ -0.18
CD47-203ENST00000398258 DSG3P32926 999 aa13.88□□□□□ -0.19
CD47-203ENST00000398258 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.74□□□□□ -0.21
CD47-203ENST00000398258 SP7Q8TDD2 431 aaPredicted RBP13.71□□□□□ -0.21
CD47-203ENST00000398258 SPINK5Q9NQ38 1064 aaPredicted RBP13.63□□□□□ -0.23
CD47-203ENST00000398258 CAPN15O75808 1086 aa13.56□□□□□ -0.24
CD47-203ENST00000398258 CHRDL2Q6WN34 429 aa13.47□□□□□ -0.25
CD47-203ENST00000398258 U3KPZ7 1027 aaPredicted RBP13.4□□□□□ -0.26
CD47-203ENST00000398258 NPM3O75607 178 aaKnown RBP13.36□□□□□ -0.27
CD47-203ENST00000398258 NCBP3Q53F19 620 aaKnown RBP13.34□□□□□ -0.27
CD47-203ENST00000398258 ABCB7O75027 752 aa13.19□□□□□ -0.3
CD47-203ENST00000398258 RBM42Q9BTD8 480 aaKnown RBP13.15□□□□□ -0.3
CD47-203ENST00000398258 PLSCR2Q9NRY7 297 aa13.1□□□□□ -0.31
CD47-203ENST00000398258 TRHP20396 242 aaPredicted RBP13.04□□□□□ -0.32
CD47-203ENST00000398258 HAX1O00165 279 aa12.96□□□□□ -0.33
CD47-203ENST00000398258 SLC4A2P04920 1241 aa12.92□□□□□ -0.34
CD47-203ENST00000398258 ZNF219Q9P2Y4 722 aaPredicted RBP12.92□□□□□ -0.34
CD47-203ENST00000398258 PIP4P2Q8N4L2 257 aa12.9□□□□□ -0.34
CD47-203ENST00000398258 EVX2Q03828 476 aa12.86□□□□□ -0.35
CD47-203ENST00000398258 LHX8Q68G74 356 aa12.84□□□□□ -0.35
CD47-203ENST00000398258 KCNA4P22459 653 aa12.78□□□□□ -0.36
CD47-203ENST00000398258 APLP2Q06481 763 aa12.69□□□□□ -0.38
CD47-203ENST00000398258 AKT1S1Q96B36 256 aa12.62□□□□□ -0.39
CD47-203ENST00000398258 FXR2P51116 673 aaKnown RBP eCLIP12.61□□□□□ -0.39
CD47-203ENST00000398258 REM2Q8IYK8 340 aaPredicted RBP12.56□□□□□ -0.4
CD47-203ENST00000398258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.47□□□□□ -0.41
CD47-203ENST00000398258 HNRNPUL2Q1KMD3 747 aaKnown RBP12.47□□□□□ -0.41
CD47-203ENST00000398258 PITPNM1O00562 1244 aa12.45□□□□□ -0.42
CD47-203ENST00000398258 SAMD1Q6SPF0 538 aaPredicted RBP12.45□□□□□ -0.42
CD47-203ENST00000398258 POLA2Q14181 598 aa12.43□□□□□ -0.42
CD47-203ENST00000398258 GABBR2O75899 941 aa12.4□□□□□ -0.42
CD47-203ENST00000398258 C19orf67A6NJJ6 358 aa12.25□□□□□ -0.45
CD47-203ENST00000398258 MYCNP04198 464 aaPredicted RBP12.24□□□□□ -0.45
CD47-203ENST00000398258 POTEIP0CG38 1075 aa12.21□□□□□ -0.45
CD47-203ENST00000398258 ATF5Q9Y2D1 282 aaPredicted RBP12.21□□□□□ -0.45
CD47-203ENST00000398258 POTEMA6NI47 508 aa12.16□□□□□ -0.46
CD47-203ENST00000398258 OSCARQ8IYS5 282 aa12.09□□□□□ -0.47
CD47-203ENST00000398258 PRKAR2AP13861 404 aaKnown RBP12.07□□□□□ -0.48
CD47-203ENST00000398258 POTEGQ6S5H5 508 aa12.07□□□□□ -0.48
CD47-203ENST00000398258 OTUD5Q96G74 571 aa11.97□□□□□ -0.49
CD47-203ENST00000398258 PCDH10Q9P2E7 1040 aa11.96□□□□□ -0.49
CD47-203ENST00000398258 ZBTB12Q9Y330 459 aaPredicted RBP11.95□□□□□ -0.5
CD47-203ENST00000398258 FOXD4L1Q9NU39 408 aa11.94□□□□□ -0.5
CD47-203ENST00000398258 SLC4A1APQ9BWU0 796 aaKnown RBP11.88□□□□□ -0.51
CD47-203ENST00000398258 ZBTB22O15209 634 aa11.84□□□□□ -0.51
CD47-203ENST00000398258 POTEB2H3BUK9 544 aa11.79□□□□□ -0.52
CD47-203ENST00000398258 CHADLQ6NUI6 762 aa11.7□□□□□ -0.54
CD47-203ENST00000398258 CLEC11AQ9Y240 323 aa11.7□□□□□ -0.54
CD47-203ENST00000398258 DCBLD2Q96PD2 775 aa11.69□□□□□ -0.54
CD47-203ENST00000398258 LCE2DQ5TA82 110 aaPredicted RBP11.66□□□□□ -0.54
CD47-203ENST00000398258 SPDYE1Q8NFV5 336 aaPredicted RBP11.64□□□□□ -0.55
CD47-203ENST00000398258 CLCN6P51797 869 aa11.62□□□□□ -0.55
CD47-203ENST00000398258 CD44P16070 742 aaKnown RBP11.6□□□□□ -0.55
CD47-203ENST00000398258 MKRN4PQ13434 485 aaPredicted RBP11.6□□□□□ -0.55
CD47-203ENST00000398258 SPDYE2BA6NHP3 402 aa11.59□□□□□ -0.55
CD47-203ENST00000398258 SPDYE6P0CI01 402 aa11.59□□□□□ -0.55
CD47-203ENST00000398258 SPDYE2Q495Y8 402 aa11.59□□□□□ -0.55
CD47-203ENST00000398258 ATXN8OSP0DMR3 200 aa11.54□□□□□ -0.56
CD47-203ENST00000398258 SSUH2Q9Y2M2 353 aa11.49□□□□□ -0.57
CD47-203ENST00000398258 FBLN2P98095 1184 aa11.47□□□□□ -0.57
CD47-203ENST00000398258 FAM163AQ96GL9 167 aaPredicted RBP11.42□□□□□ -0.58
CD47-203ENST00000398258 POTEJP0CG39 1038 aa11.41□□□□□ -0.58
CD47-203ENST00000398258 ZNF692Q9BU19 519 aaPredicted RBP11.41□□□□□ -0.58
CD47-203ENST00000398258 ZNF579Q8NAF0 562 aaKnown RBP11.38□□□□□ -0.59
CD47-203ENST00000398258 GALR2O43603 387 aaPredicted RBP11.37□□□□□ -0.59
CD47-203ENST00000398258 FARP1Q9Y4F1 1045 aaPredicted RBP11.36□□□□□ -0.59
CD47-203ENST00000398258 CDAN1Q8IWY9 1227 aa11.34□□□□□ -0.59
CD47-203ENST00000398258 PELP1Q8IZL8 1130 aaKnown RBP11.33□□□□□ -0.6
CD47-203ENST00000398258 PRR29P0C7W0 189 aa11.31□□□□□ -0.6
CD47-203ENST00000398258 PABPN1Q86U42 306 aaKnown RBP eCLIP11.27□□□□□ -0.61
CD47-203ENST00000398258 MMRN1Q13201 1228 aa11.23□□□□□ -0.61
CD47-203ENST00000398258 ZRANB1Q9UGI0 708 aa11.23□□□□□ -0.61
CD47-203ENST00000398258 MAMSTRQ6ZN01 415 aa11.19□□□□□ -0.62
CD47-203ENST00000398258 METRNQ9UJH8 293 aa11.16□□□□□ -0.62
CD47-203ENST00000398258 SPNS2Q8IVW8 549 aa11.11□□□□□ -0.63
CD47-203ENST00000398258 C7P10643 843 aa11.06□□□□□ -0.64
CD47-203ENST00000398258 SCUBE2Q9NQ36 999 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms