Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDH9Q9HC56 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDH9Q9HC56 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDH9Q9HC56 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.96■■□□□ 1.11
PCDH9Q9HC56 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.96■■□□□ 1.11
PCDH9Q9HC56 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.96■■□□□ 1.11
PCDH9Q9HC56 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.96■■□□□ 1.11
PCDH9Q9HC56 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
PCDH9Q9HC56 AF106564.1-201ENST00000607058 2553 ntBASIC21.96■■□□□ 1.11
PCDH9Q9HC56 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDH9Q9HC56 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDH9Q9HC56 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PCDH9Q9HC56 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDH9Q9HC56 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDH9Q9HC56 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PCDH9Q9HC56 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.95■■□□□ 1.1
PCDH9Q9HC56 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.95■■□□□ 1.1
PCDH9Q9HC56 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDH9Q9HC56 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDH9Q9HC56 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.95■■□□□ 1.1
PCDH9Q9HC56 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.95■■□□□ 1.1
PCDH9Q9HC56 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.95■■□□□ 1.1
PCDH9Q9HC56 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDH9Q9HC56 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.95■■□□□ 1.1
PCDH9Q9HC56 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 AL034346.1-201ENST00000568244 1277 ntBASIC21.94■■□□□ 1.1
PCDH9Q9HC56 TSPY26P-201ENST00000476365 1326 ntBASIC21.94■■□□□ 1.1
PCDH9Q9HC56 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PCDH9Q9HC56 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDH9Q9HC56 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.92■■□□□ 1.1
PCDH9Q9HC56 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDH9Q9HC56 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PCDH9Q9HC56 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDH9Q9HC56 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDH9Q9HC56 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.9■■□□□ 1.1
PCDH9Q9HC56 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
PCDH9Q9HC56 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms