Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CDX2Q99626 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
CDX2Q99626 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CDX2Q99626 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CDX2Q99626 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC22.64■■□□□ 1.21
CDX2Q99626 PRKY-204ENST00000533551 1019 ntBASIC22.64■■□□□ 1.21
CDX2Q99626 PNMA6B-201ENST00000538162 1200 ntBASIC22.64■■□□□ 1.21
CDX2Q99626 TPM1-226ENST00000560959 925 ntTSL 2 BASIC22.64■■□□□ 1.21
CDX2Q99626 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.64■■□□□ 1.21
CDX2Q99626 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CDX2Q99626 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.64■■□□□ 1.21
CDX2Q99626 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC22.64■■□□□ 1.21
CDX2Q99626 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CDX2Q99626 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
CDX2Q99626 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC22.63■■□□□ 1.21
CDX2Q99626 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC22.63■■□□□ 1.21
CDX2Q99626 PBX1-209ENST00000485769 834 ntTSL 2 BASIC22.63■■□□□ 1.21
CDX2Q99626 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CDX2Q99626 DHDH-203ENST00000522614 776 ntTSL 5 BASIC22.63■■□□□ 1.21
CDX2Q99626 AL049597.2-201ENST00000565575 961 ntBASIC22.63■■□□□ 1.21
CDX2Q99626 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC22.63■■□□□ 1.21
CDX2Q99626 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC22.63■■□□□ 1.21
CDX2Q99626 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC22.63■■□□□ 1.21
CDX2Q99626 KRT17P1-201ENST00000399211 1546 ntBASIC22.62■■□□□ 1.21
CDX2Q99626 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CDX2Q99626 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CDX2Q99626 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC22.62■■□□□ 1.21
CDX2Q99626 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
CDX2Q99626 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC22.62■■□□□ 1.21
CDX2Q99626 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC22.62■■□□□ 1.21
CDX2Q99626 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC22.62■■□□□ 1.21
CDX2Q99626 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC22.62■■□□□ 1.21
CDX2Q99626 AC120498.10-201ENST00000621827 505 ntBASIC22.62■■□□□ 1.21
CDX2Q99626 DUSP8P3-201ENST00000399571 1760 ntBASIC22.62■■□□□ 1.21
CDX2Q99626 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
CDX2Q99626 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
CDX2Q99626 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CDX2Q99626 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CDX2Q99626 AC079630.1-202ENST00000618127 1840 ntBASIC22.61■■□□□ 1.21
CDX2Q99626 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
CDX2Q99626 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
CDX2Q99626 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CDX2Q99626 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
CDX2Q99626 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC22.61■■□□□ 1.21
CDX2Q99626 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.61■■□□□ 1.21
CDX2Q99626 MIR4785-201ENST00000585005 73 ntBASIC22.61■■□□□ 1.21
CDX2Q99626 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
CDX2Q99626 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
CDX2Q99626 AL049637.2-201ENST00000641778 930 ntBASIC22.61■■□□□ 1.21
CDX2Q99626 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CDX2Q99626 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CDX2Q99626 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CDX2Q99626 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CDX2Q99626 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CDX2Q99626 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CDX2Q99626 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CDX2Q99626 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC22.6■■□□□ 1.21
CDX2Q99626 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CDX2Q99626 BRWD1-AS2-201ENST00000603064 1028 ntBASIC22.6■■□□□ 1.21
CDX2Q99626 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
CDX2Q99626 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CDX2Q99626 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
CDX2Q99626 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CDX2Q99626 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC22.59■■□□□ 1.21
CDX2Q99626 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC22.59■■□□□ 1.21
CDX2Q99626 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
CDX2Q99626 RMI2-205ENST00000576027 818 ntTSL 2 BASIC22.59■■□□□ 1.21
CDX2Q99626 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
CDX2Q99626 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
CDX2Q99626 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.59■■□□□ 1.21
CDX2Q99626 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC22.59■■□□□ 1.21
CDX2Q99626 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC22.59■■□□□ 1.21
CDX2Q99626 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CDX2Q99626 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
CDX2Q99626 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
CDX2Q99626 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CDX2Q99626 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CDX2Q99626 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CDX2Q99626 ISG20-202ENST00000379224 540 ntTSL 3 BASIC22.58■■□□□ 1.21
CDX2Q99626 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CDX2Q99626 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.58■■□□□ 1.21
CDX2Q99626 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CDX2Q99626 AL355472.2-201ENST00000422958 438 ntBASIC22.58■■□□□ 1.21
CDX2Q99626 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CDX2Q99626 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC22.58■■□□□ 1.21
CDX2Q99626 AP001412.1-201ENST00000608405 714 ntBASIC22.58■■□□□ 1.21
CDX2Q99626 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC22.58■■□□□ 1.21
CDX2Q99626 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC22.58■■□□□ 1.2
CDX2Q99626 RBM17P2-201ENST00000616397 1405 ntBASIC22.57■■□□□ 1.2
CDX2Q99626 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
CDX2Q99626 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CDX2Q99626 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CDX2Q99626 POU5F1P4-201ENST00000413175 1085 ntBASIC22.57■■□□□ 1.2
CDX2Q99626 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC22.57■■□□□ 1.2
CDX2Q99626 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC22.57■■□□□ 1.2
CDX2Q99626 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC22.57■■□□□ 1.2
CDX2Q99626 AC092368.3-202ENST00000574180 1591 ntBASIC22.57■■□□□ 1.2
CDX2Q99626 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CDX2Q99626 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC22.57■■□□□ 1.2
CDX2Q99626 AL353803.4-201ENST00000565882 1934 ntBASIC22.57■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms