Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 THRA-202ENST00000394121 2260 ntTSL 2 BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.63■□□□□ 0.41
CSPG4Q6UVK1 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CSPG4Q6UVK1 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC17.62■□□□□ 0.41
CSPG4Q6UVK1 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CSPG4Q6UVK1 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CSPG4Q6UVK1 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CSPG4Q6UVK1 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CSPG4Q6UVK1 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CSPG4Q6UVK1 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CSPG4Q6UVK1 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CSPG4Q6UVK1 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CSPG4Q6UVK1 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.62■□□□□ 0.41
CSPG4Q6UVK1 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC17.62■□□□□ 0.41
CSPG4Q6UVK1 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 AC073648.6-201ENST00000641589 218 ntBASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CSPG4Q6UVK1 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CSPG4Q6UVK1 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 AC093787.1-201ENST00000450396 207 ntBASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CSPG4Q6UVK1 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 AC097658.1-201ENST00000475555 843 ntBASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 AP003097.1-201ENST00000530657 1135 ntBASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 AL162412.1-201ENST00000567129 965 ntBASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.58■□□□□ 0.41
CSPG4Q6UVK1 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CSPG4Q6UVK1 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CSPG4Q6UVK1 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CSPG4Q6UVK1 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CSPG4Q6UVK1 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.58■□□□□ 0.4
CSPG4Q6UVK1 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
CSPG4Q6UVK1 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CSPG4Q6UVK1 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.58■□□□□ 0.4
CSPG4Q6UVK1 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.58■□□□□ 0.4
CSPG4Q6UVK1 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CSPG4Q6UVK1 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CSPG4Q6UVK1 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CSPG4Q6UVK1 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CSPG4Q6UVK1 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.57■□□□□ 0.4
CSPG4Q6UVK1 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.57■□□□□ 0.4
CSPG4Q6UVK1 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CSPG4Q6UVK1 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CSPG4Q6UVK1 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CSPG4Q6UVK1 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CSPG4Q6UVK1 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CSPG4Q6UVK1 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms