Protein–RNA interactions for Protein: Q5SXM2

SNAPC4, snRNA-activating protein complex subunit 4, humanhuman

Predictions only

Length 1,469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNAPC4Q5SXM2 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
SNAPC4Q5SXM2 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
SNAPC4Q5SXM2 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC35.3■■■■□ 3.24
SNAPC4Q5SXM2 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
SNAPC4Q5SXM2 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 AC211429.1-201ENST00000415277 523 ntBASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 GATS-209ENST00000454084 1030 ntTSL 3 BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC35.29■■■■□ 3.24
SNAPC4Q5SXM2 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
SNAPC4Q5SXM2 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC35.28■■■■□ 3.24
SNAPC4Q5SXM2 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC35.28■■■■□ 3.24
SNAPC4Q5SXM2 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
SNAPC4Q5SXM2 RPPH1-201ENST00000516869 333 ntBASIC35.28■■■■□ 3.24
SNAPC4Q5SXM2 RPS20-210ENST00000523936 899 ntTSL 2 BASIC35.28■■■■□ 3.24
SNAPC4Q5SXM2 AC060766.5-201ENST00000590539 871 ntBASIC35.28■■■■□ 3.24
SNAPC4Q5SXM2 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC35.28■■■■□ 3.24
SNAPC4Q5SXM2 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC35.28■■■■□ 3.24
SNAPC4Q5SXM2 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC35.28■■■■□ 3.24
SNAPC4Q5SXM2 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
SNAPC4Q5SXM2 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC35.27■■■■□ 3.24
SNAPC4Q5SXM2 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC35.27■■■■□ 3.24
SNAPC4Q5SXM2 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC35.27■■■■□ 3.24
SNAPC4Q5SXM2 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC35.27■■■■□ 3.24
SNAPC4Q5SXM2 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC35.27■■■■□ 3.24
SNAPC4Q5SXM2 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC35.27■■■■□ 3.24
SNAPC4Q5SXM2 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC35.26■■■■□ 3.24
SNAPC4Q5SXM2 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC35.26■■■■□ 3.24
SNAPC4Q5SXM2 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC35.26■■■■□ 3.23
SNAPC4Q5SXM2 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC35.26■■■■□ 3.23
SNAPC4Q5SXM2 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC35.26■■■■□ 3.23
SNAPC4Q5SXM2 Z99916.2-201ENST00000604037 246 ntBASIC35.26■■■■□ 3.23
SNAPC4Q5SXM2 LINC01023-201ENST00000606054 436 ntBASIC35.26■■■■□ 3.23
SNAPC4Q5SXM2 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC35.26■■■■□ 3.23
SNAPC4Q5SXM2 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.23
SNAPC4Q5SXM2 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.23
SNAPC4Q5SXM2 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC35.25■■■■□ 3.23
SNAPC4Q5SXM2 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC35.25■■■■□ 3.23
SNAPC4Q5SXM2 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC35.25■■■■□ 3.23
SNAPC4Q5SXM2 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
SNAPC4Q5SXM2 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC35.24■■■■□ 3.23
SNAPC4Q5SXM2 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC35.24■■■■□ 3.23
SNAPC4Q5SXM2 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC35.24■■■■□ 3.23
SNAPC4Q5SXM2 FAM197Y4-202ENST00000622692 608 ntBASIC35.24■■■■□ 3.23
SNAPC4Q5SXM2 KRT17P1-201ENST00000399211 1546 ntBASIC35.24■■■■□ 3.23
SNAPC4Q5SXM2 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
SNAPC4Q5SXM2 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC35.24■■■■□ 3.23
SNAPC4Q5SXM2 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
SNAPC4Q5SXM2 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC35.24■■■■□ 3.23
SNAPC4Q5SXM2 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC35.23■■■■□ 3.23
SNAPC4Q5SXM2 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
SNAPC4Q5SXM2 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
SNAPC4Q5SXM2 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC35.23■■■■□ 3.23
SNAPC4Q5SXM2 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
SNAPC4Q5SXM2 C1QBPP2-201ENST00000528754 825 ntBASIC35.23■■■■□ 3.23
SNAPC4Q5SXM2 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC35.23■■■■□ 3.23
SNAPC4Q5SXM2 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC35.23■■■■□ 3.23
SNAPC4Q5SXM2 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
SNAPC4Q5SXM2 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC35.22■■■■□ 3.23
SNAPC4Q5SXM2 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC35.22■■■■□ 3.23
SNAPC4Q5SXM2 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
SNAPC4Q5SXM2 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
SNAPC4Q5SXM2 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC35.22■■■■□ 3.23
SNAPC4Q5SXM2 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC35.22■■■■□ 3.23
SNAPC4Q5SXM2 AC233263.1-201ENST00000578059 224 ntBASIC35.22■■■■□ 3.23
SNAPC4Q5SXM2 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
SNAPC4Q5SXM2 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC35.22■■■■□ 3.23
SNAPC4Q5SXM2 AL591742.1-201ENST00000604433 565 ntBASIC35.22■■■■□ 3.23
SNAPC4Q5SXM2 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC35.21■■■■□ 3.23
SNAPC4Q5SXM2 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC35.21■■■■□ 3.23
SNAPC4Q5SXM2 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC35.21■■■■□ 3.23
SNAPC4Q5SXM2 AL139125.2-201ENST00000623134 1869 ntBASIC35.21■■■■□ 3.23
SNAPC4Q5SXM2 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
SNAPC4Q5SXM2 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC35.21■■■■□ 3.23
SNAPC4Q5SXM2 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC35.21■■■■□ 3.23
SNAPC4Q5SXM2 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC35.21■■■■□ 3.23
SNAPC4Q5SXM2 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC35.21■■■■□ 3.23
SNAPC4Q5SXM2 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC35.21■■■■□ 3.23
SNAPC4Q5SXM2 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
SNAPC4Q5SXM2 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
SNAPC4Q5SXM2 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
SNAPC4Q5SXM2 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC35.2■■■■□ 3.23
SNAPC4Q5SXM2 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC35.2■■■■□ 3.23
SNAPC4Q5SXM2 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC35.2■■■■□ 3.23
SNAPC4Q5SXM2 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC35.2■■■■□ 3.23
SNAPC4Q5SXM2 MDFI-202ENST00000373050 809 ntTSL 2 BASIC35.2■■■■□ 3.23
SNAPC4Q5SXM2 AL034346.1-201ENST00000568244 1277 ntBASIC35.2■■■■□ 3.23
SNAPC4Q5SXM2 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC35.2■■■■□ 3.23
SNAPC4Q5SXM2 CYP2T3P-201ENST00000601990 817 ntBASIC35.2■■■■□ 3.23
SNAPC4Q5SXM2 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC35.2■■■■□ 3.23
SNAPC4Q5SXM2 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC35.2■■■■□ 3.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms