Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NEK3P51956 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NEK3P51956 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
NEK3P51956 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
NEK3P51956 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
NEK3P51956 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.89■■□□□ 1.1
NEK3P51956 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
NEK3P51956 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
NEK3P51956 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
NEK3P51956 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NEK3P51956 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.89■■□□□ 1.09
NEK3P51956 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
NEK3P51956 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
NEK3P51956 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
NEK3P51956 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.88■■□□□ 1.09
NEK3P51956 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
NEK3P51956 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NEK3P51956 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NEK3P51956 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NEK3P51956 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.88■■□□□ 1.09
NEK3P51956 TERF1P2-201ENST00000583350 1212 ntBASIC21.88■■□□□ 1.09
NEK3P51956 SMUG1P1-201ENST00000590640 811 ntBASIC21.88■■□□□ 1.09
NEK3P51956 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.88■■□□□ 1.09
NEK3P51956 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NEK3P51956 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NEK3P51956 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NEK3P51956 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
NEK3P51956 LINC01960-201ENST00000563759 1884 ntBASIC21.88■■□□□ 1.09
NEK3P51956 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
NEK3P51956 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NEK3P51956 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.87■■□□□ 1.09
NEK3P51956 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
NEK3P51956 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NEK3P51956 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NEK3P51956 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.87■■□□□ 1.09
NEK3P51956 KRT18P14-201ENST00000534205 1250 ntBASIC21.87■■□□□ 1.09
NEK3P51956 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.87■■□□□ 1.09
NEK3P51956 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.87■■□□□ 1.09
NEK3P51956 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
NEK3P51956 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.87■■□□□ 1.09
NEK3P51956 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NEK3P51956 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NEK3P51956 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NEK3P51956 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.86■■□□□ 1.09
NEK3P51956 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NEK3P51956 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NEK3P51956 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.86■■□□□ 1.09
NEK3P51956 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
NEK3P51956 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NEK3P51956 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NEK3P51956 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.86■■□□□ 1.09
NEK3P51956 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.86■■□□□ 1.09
NEK3P51956 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
NEK3P51956 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
NEK3P51956 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.86■■□□□ 1.09
NEK3P51956 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NEK3P51956 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.86■■□□□ 1.09
NEK3P51956 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.86■■□□□ 1.09
NEK3P51956 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.86■■□□□ 1.09
NEK3P51956 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
NEK3P51956 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NEK3P51956 BX005040.4-201ENST00000637145 1518 ntBASIC21.85■■□□□ 1.09
NEK3P51956 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NEK3P51956 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NEK3P51956 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NEK3P51956 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.85■■□□□ 1.09
NEK3P51956 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
NEK3P51956 KRT18P5-201ENST00000436075 1291 ntBASIC21.85■■□□□ 1.09
NEK3P51956 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
NEK3P51956 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.85■■□□□ 1.09
NEK3P51956 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.85■■□□□ 1.09
NEK3P51956 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NEK3P51956 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.85■■□□□ 1.09
NEK3P51956 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NEK3P51956 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NEK3P51956 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
NEK3P51956 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NEK3P51956 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NEK3P51956 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NEK3P51956 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.84■■□□□ 1.09
NEK3P51956 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.84■■□□□ 1.09
NEK3P51956 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.84■■□□□ 1.09
NEK3P51956 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NEK3P51956 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NEK3P51956 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
NEK3P51956 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NEK3P51956 TPRG1LP1-201ENST00000598702 760 ntBASIC21.84■■□□□ 1.09
NEK3P51956 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.84■■□□□ 1.09
NEK3P51956 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.84■■□□□ 1.09
NEK3P51956 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.84■■□□□ 1.09
NEK3P51956 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
NEK3P51956 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
NEK3P51956 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.83■■□□□ 1.09
NEK3P51956 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NEK3P51956 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
NEK3P51956 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NEK3P51956 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
NEK3P51956 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.83■■□□□ 1.09
NEK3P51956 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.83■■□□□ 1.09
NEK3P51956 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms