Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.62■□□□□ 0.89
COL5A1P20908 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.62■□□□□ 0.89
COL5A1P20908 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.62■□□□□ 0.89
COL5A1P20908 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A1P20908 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.61■□□□□ 0.89
COL5A1P20908 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
COL5A1P20908 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A1P20908 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.61■□□□□ 0.89
COL5A1P20908 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A1P20908 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A1P20908 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL5A1P20908 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.61■□□□□ 0.89
COL5A1P20908 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.61■□□□□ 0.89
COL5A1P20908 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
COL5A1P20908 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.61■□□□□ 0.89
COL5A1P20908 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.61■□□□□ 0.89
COL5A1P20908 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.61■□□□□ 0.89
COL5A1P20908 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A1P20908 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A1P20908 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.61■□□□□ 0.89
COL5A1P20908 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A1P20908 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A1P20908 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A1P20908 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.61■□□□□ 0.89
COL5A1P20908 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL5A1P20908 KRT16P2-201ENST00000414673 1423 ntBASIC20.6■□□□□ 0.89
COL5A1P20908 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A1P20908 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.6■□□□□ 0.89
COL5A1P20908 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.6■□□□□ 0.89
COL5A1P20908 DUSP5P2-201ENST00000426873 1033 ntBASIC20.6■□□□□ 0.89
COL5A1P20908 GCSHP5-201ENST00000443090 522 ntBASIC20.6■□□□□ 0.89
COL5A1P20908 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.6■□□□□ 0.89
COL5A1P20908 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A1P20908 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.6■□□□□ 0.89
COL5A1P20908 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A1P20908 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.6■□□□□ 0.89
COL5A1P20908 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A1P20908 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A1P20908 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.6■□□□□ 0.89
COL5A1P20908 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.6■□□□□ 0.89
COL5A1P20908 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.6■□□□□ 0.89
COL5A1P20908 AC091874.3-201ENST00000512672 1195 ntBASIC20.6■□□□□ 0.89
COL5A1P20908 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A1P20908 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A1P20908 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A1P20908 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A1P20908 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL5A1P20908 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.59■□□□□ 0.89
COL5A1P20908 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A1P20908 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A1P20908 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.59■□□□□ 0.89
COL5A1P20908 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.59■□□□□ 0.89
COL5A1P20908 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.59■□□□□ 0.89
COL5A1P20908 AC008694.1-202ENST00000636953 945 ntBASIC20.59■□□□□ 0.89
COL5A1P20908 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A1P20908 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A1P20908 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.58■□□□□ 0.89
COL5A1P20908 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A1P20908 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A1P20908 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A1P20908 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A1P20908 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A1P20908 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
COL5A1P20908 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A1P20908 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.58■□□□□ 0.89
COL5A1P20908 AC008175.2-201ENST00000612840 297 ntBASIC20.58■□□□□ 0.89
COL5A1P20908 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A1P20908 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.58■□□□□ 0.89
COL5A1P20908 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A1P20908 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL5A1P20908 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL5A1P20908 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.58■□□□□ 0.88
COL5A1P20908 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A1P20908 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A1P20908 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
COL5A1P20908 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.57■□□□□ 0.88
COL5A1P20908 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.57■□□□□ 0.88
COL5A1P20908 AC120498.10-201ENST00000621827 505 ntBASIC20.57■□□□□ 0.88
COL5A1P20908 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
COL5A1P20908 AC010980.2-201ENST00000587099 1412 ntBASIC20.57■□□□□ 0.88
COL5A1P20908 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL5A1P20908 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A1P20908 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A1P20908 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A1P20908 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A1P20908 POU5F1P4-201ENST00000413175 1085 ntBASIC20.57■□□□□ 0.88
COL5A1P20908 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL5A1P20908 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A1P20908 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A1P20908 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL5A1P20908 RBM17P2-201ENST00000616397 1405 ntBASIC20.57■□□□□ 0.88
COL5A1P20908 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.56■□□□□ 0.88
COL5A1P20908 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A1P20908 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A1P20908 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms