Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDLRP01130 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.41■□□□□ 0.86
LDLRP01130 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.41■□□□□ 0.86
LDLRP01130 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LDLRP01130 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDLRP01130 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.41■□□□□ 0.86
LDLRP01130 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.41■□□□□ 0.86
LDLRP01130 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDLRP01130 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDLRP01130 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LDLRP01130 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LDLRP01130 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LDLRP01130 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.41■□□□□ 0.86
LDLRP01130 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.41■□□□□ 0.86
LDLRP01130 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.41■□□□□ 0.86
LDLRP01130 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LDLRP01130 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.41■□□□□ 0.86
LDLRP01130 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.41■□□□□ 0.86
LDLRP01130 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LDLRP01130 LINC01960-201ENST00000563759 1884 ntBASIC20.41■□□□□ 0.86
LDLRP01130 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.41■□□□□ 0.86
LDLRP01130 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDLRP01130 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LDLRP01130 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDLRP01130 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDLRP01130 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDLRP01130 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDLRP01130 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LDLRP01130 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.4■□□□□ 0.86
LDLRP01130 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDLRP01130 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.4■□□□□ 0.86
LDLRP01130 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.4■□□□□ 0.86
LDLRP01130 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LDLRP01130 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LDLRP01130 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDLRP01130 AC233992.3-201ENST00000607491 485 ntBASIC20.4■□□□□ 0.86
LDLRP01130 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDLRP01130 AC136469.2-201ENST00000623944 1028 ntBASIC20.4■□□□□ 0.86
LDLRP01130 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDLRP01130 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
LDLRP01130 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.39■□□□□ 0.86
LDLRP01130 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LDLRP01130 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
LDLRP01130 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
LDLRP01130 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.39■□□□□ 0.85
LDLRP01130 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDLRP01130 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
LDLRP01130 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.39■□□□□ 0.85
LDLRP01130 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.39■□□□□ 0.85
LDLRP01130 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDLRP01130 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDLRP01130 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.39■□□□□ 0.85
LDLRP01130 YBX1P1-201ENST00000445822 960 ntBASIC20.39■□□□□ 0.85
LDLRP01130 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.39■□□□□ 0.85
LDLRP01130 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LDLRP01130 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDLRP01130 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDLRP01130 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDLRP01130 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDLRP01130 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDLRP01130 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
LDLRP01130 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
LDLRP01130 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.38■□□□□ 0.85
LDLRP01130 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.38■□□□□ 0.85
LDLRP01130 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
LDLRP01130 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.38■□□□□ 0.85
LDLRP01130 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.38■□□□□ 0.85
LDLRP01130 AL031602.1-201ENST00000633169 911 ntBASIC20.38■□□□□ 0.85
LDLRP01130 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.38■□□□□ 0.85
LDLRP01130 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.38■□□□□ 0.85
LDLRP01130 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDLRP01130 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
LDLRP01130 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
LDLRP01130 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.37■□□□□ 0.85
LDLRP01130 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDLRP01130 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LDLRP01130 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDLRP01130 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDLRP01130 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
LDLRP01130 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
LDLRP01130 AC004911.1-201ENST00000416316 871 ntBASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms