Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SIX3O95343 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SIX3O95343 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SIX3O95343 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.78■□□□□ 0.92
SIX3O95343 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SIX3O95343 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.78■□□□□ 0.92
SIX3O95343 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SIX3O95343 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SIX3O95343 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
SIX3O95343 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SIX3O95343 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.77■□□□□ 0.92
SIX3O95343 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX3O95343 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.77■□□□□ 0.92
SIX3O95343 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.77■□□□□ 0.92
SIX3O95343 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX3O95343 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX3O95343 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX3O95343 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX3O95343 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX3O95343 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SIX3O95343 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SIX3O95343 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SIX3O95343 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.77■□□□□ 0.91
SIX3O95343 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.76■□□□□ 0.91
SIX3O95343 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX3O95343 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX3O95343 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SIX3O95343 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX3O95343 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX3O95343 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.76■□□□□ 0.91
SIX3O95343 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.76■□□□□ 0.91
SIX3O95343 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.76■□□□□ 0.91
SIX3O95343 AC133561.4-201ENST00000566112 224 ntBASIC20.76■□□□□ 0.91
SIX3O95343 SMUG1P1-201ENST00000590640 811 ntBASIC20.76■□□□□ 0.91
SIX3O95343 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SIX3O95343 AC233992.3-201ENST00000607491 485 ntBASIC20.76■□□□□ 0.91
SIX3O95343 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX3O95343 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SIX3O95343 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX3O95343 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX3O95343 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SIX3O95343 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX3O95343 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX3O95343 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX3O95343 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX3O95343 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX3O95343 AP006587.3-201ENST00000525742 1516 ntBASIC20.75■□□□□ 0.91
SIX3O95343 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SIX3O95343 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX3O95343 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX3O95343 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX3O95343 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SIX3O95343 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SIX3O95343 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SIX3O95343 AC135279.3-201ENST00000610945 1311 ntBASIC20.75■□□□□ 0.91
SIX3O95343 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SIX3O95343 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SIX3O95343 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SIX3O95343 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX3O95343 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX3O95343 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX3O95343 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.74■□□□□ 0.91
SIX3O95343 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX3O95343 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX3O95343 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX3O95343 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SIX3O95343 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.74■□□□□ 0.91
SIX3O95343 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX3O95343 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX3O95343 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX3O95343 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX3O95343 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.74■□□□□ 0.91
SIX3O95343 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SIX3O95343 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.74■□□□□ 0.91
SIX3O95343 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.74■□□□□ 0.91
SIX3O95343 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SIX3O95343 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.73■□□□□ 0.91
SIX3O95343 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.73■□□□□ 0.91
SIX3O95343 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.73■□□□□ 0.91
SIX3O95343 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.73■□□□□ 0.91
SIX3O95343 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 AC126544.1-201ENST00000580842 1059 ntBASIC20.73■□□□□ 0.91
SIX3O95343 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.73■□□□□ 0.91
SIX3O95343 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SIX3O95343 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SIX3O95343 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX3O95343 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX3O95343 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.72■□□□□ 0.91
SIX3O95343 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms