Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
PTCD1O75127 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC27.45■■□□□ 1.99
PTCD1O75127 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC27.45■■□□□ 1.99
PTCD1O75127 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
PTCD1O75127 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
PTCD1O75127 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
PTCD1O75127 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
PTCD1O75127 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC27.45■■□□□ 1.98
PTCD1O75127 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
PTCD1O75127 POU5F1P3-201ENST00000428824 1078 ntBASIC27.45■■□□□ 1.98
PTCD1O75127 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC27.45■■□□□ 1.98
PTCD1O75127 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC27.45■■□□□ 1.98
PTCD1O75127 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC27.45■■□□□ 1.98
PTCD1O75127 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
PTCD1O75127 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
PTCD1O75127 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
PTCD1O75127 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC27.44■■□□□ 1.98
PTCD1O75127 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC27.44■■□□□ 1.98
PTCD1O75127 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
PTCD1O75127 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC27.44■■□□□ 1.98
PTCD1O75127 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC27.44■■□□□ 1.98
PTCD1O75127 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
PTCD1O75127 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
PTCD1O75127 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC27.43■■□□□ 1.98
PTCD1O75127 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
PTCD1O75127 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
PTCD1O75127 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
PTCD1O75127 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC27.43■■□□□ 1.98
PTCD1O75127 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
PTCD1O75127 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
PTCD1O75127 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC27.43■■□□□ 1.98
PTCD1O75127 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC27.43■■□□□ 1.98
PTCD1O75127 AC008694.1-202ENST00000636953 945 ntBASIC27.43■■□□□ 1.98
PTCD1O75127 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
PTCD1O75127 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC27.43■■□□□ 1.98
PTCD1O75127 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
PTCD1O75127 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC27.43■■□□□ 1.98
PTCD1O75127 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
PTCD1O75127 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC27.42■■□□□ 1.98
PTCD1O75127 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
PTCD1O75127 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
PTCD1O75127 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
PTCD1O75127 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC27.42■■□□□ 1.98
PTCD1O75127 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC27.42■■□□□ 1.98
PTCD1O75127 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
PTCD1O75127 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC27.42■■□□□ 1.98
PTCD1O75127 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
PTCD1O75127 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
PTCD1O75127 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC27.41■■□□□ 1.98
PTCD1O75127 BX276092.2-201ENST00000417668 665 ntBASIC27.41■■□□□ 1.98
PTCD1O75127 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC27.41■■□□□ 1.98
PTCD1O75127 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC27.41■■□□□ 1.98
PTCD1O75127 RNF146-206ENST00000480444 843 ntTSL 2 BASIC27.41■■□□□ 1.98
PTCD1O75127 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC27.41■■□□□ 1.98
PTCD1O75127 DET1-205ENST00000558413 583 ntTSL 4 BASIC27.41■■□□□ 1.98
PTCD1O75127 AC069236.1-201ENST00000604339 616 ntBASIC27.41■■□□□ 1.98
PTCD1O75127 AC008175.2-201ENST00000612840 297 ntBASIC27.41■■□□□ 1.98
PTCD1O75127 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
PTCD1O75127 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC27.4■■□□□ 1.98
PTCD1O75127 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
PTCD1O75127 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC27.4■■□□□ 1.98
PTCD1O75127 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
PTCD1O75127 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC27.4■■□□□ 1.98
PTCD1O75127 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
PTCD1O75127 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC27.4■■□□□ 1.98
PTCD1O75127 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC27.4■■□□□ 1.98
PTCD1O75127 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
PTCD1O75127 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
PTCD1O75127 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
PTCD1O75127 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC27.39■■□□□ 1.98
PTCD1O75127 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC27.39■■□□□ 1.98
PTCD1O75127 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.98
PTCD1O75127 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
PTCD1O75127 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
PTCD1O75127 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC27.39■■□□□ 1.98
PTCD1O75127 AL512625.2-201ENST00000417533 625 ntBASIC27.39■■□□□ 1.98
PTCD1O75127 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC27.39■■□□□ 1.98
PTCD1O75127 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC27.39■■□□□ 1.98
PTCD1O75127 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC27.39■■□□□ 1.98
PTCD1O75127 AC092118.2-201ENST00000613495 667 ntBASIC27.39■■□□□ 1.98
PTCD1O75127 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.98
PTCD1O75127 AC120498.10-201ENST00000621827 505 ntBASIC27.39■■□□□ 1.98
PTCD1O75127 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
PTCD1O75127 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC27.39■■□□□ 1.97
PTCD1O75127 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
PTCD1O75127 GCA-201ENST00000233612 1694 ntTSL 2 BASIC27.38■■□□□ 1.97
PTCD1O75127 KRT18P29-201ENST00000397031 1267 ntBASIC27.38■■□□□ 1.97
PTCD1O75127 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
PTCD1O75127 AC093827.2-201ENST00000512654 315 ntBASIC27.38■■□□□ 1.97
PTCD1O75127 ITM2C-210ENST00000620962 501 ntBASIC27.38■■□□□ 1.97
PTCD1O75127 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
PTCD1O75127 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC27.38■■□□□ 1.97
PTCD1O75127 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC27.38■■□□□ 1.97
PTCD1O75127 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
PTCD1O75127 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC27.38■■□□□ 1.97
PTCD1O75127 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
PTCD1O75127 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
PTCD1O75127 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
PTCD1O75127 COMT-203ENST00000403184 2217 ntTSL 2 BASIC27.37■■□□□ 1.97
PTCD1O75127 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC27.37■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms