Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.84■□□□□ 0.93
SDC3O75056 AC087742.1-201ENST00000575880 1738 ntBASIC20.84■□□□□ 0.93
SDC3O75056 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SDC3O75056 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SDC3O75056 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.84■□□□□ 0.93
SDC3O75056 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.84■□□□□ 0.93
SDC3O75056 CYP2T1P-201ENST00000432607 1285 ntBASIC20.84■□□□□ 0.93
SDC3O75056 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.84■□□□□ 0.93
SDC3O75056 AC133552.2-202ENST00000575694 574 ntBASIC20.84■□□□□ 0.93
SDC3O75056 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SDC3O75056 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SDC3O75056 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SDC3O75056 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.84■□□□□ 0.93
SDC3O75056 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SDC3O75056 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SDC3O75056 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SDC3O75056 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SDC3O75056 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SDC3O75056 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.83■□□□□ 0.93
SDC3O75056 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.83■□□□□ 0.93
SDC3O75056 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SDC3O75056 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SDC3O75056 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
SDC3O75056 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SDC3O75056 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
SDC3O75056 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SDC3O75056 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SDC3O75056 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SDC3O75056 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SDC3O75056 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.82■□□□□ 0.92
SDC3O75056 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.82■□□□□ 0.92
SDC3O75056 AC133041.1-202ENST00000642053 222 ntBASIC20.82■□□□□ 0.92
SDC3O75056 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SDC3O75056 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SDC3O75056 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.82■□□□□ 0.92
SDC3O75056 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.81■□□□□ 0.92
SDC3O75056 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.81■□□□□ 0.92
SDC3O75056 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SDC3O75056 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SDC3O75056 AC068338.2-201ENST00000563278 1430 ntBASIC20.81■□□□□ 0.92
SDC3O75056 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.81■□□□□ 0.92
SDC3O75056 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SDC3O75056 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
SDC3O75056 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.81■□□□□ 0.92
SDC3O75056 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.81■□□□□ 0.92
SDC3O75056 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.81■□□□□ 0.92
SDC3O75056 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.81■□□□□ 0.92
SDC3O75056 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SDC3O75056 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SDC3O75056 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SDC3O75056 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SDC3O75056 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
SDC3O75056 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SDC3O75056 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC3O75056 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SDC3O75056 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SDC3O75056 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC3O75056 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC3O75056 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.8■□□□□ 0.92
SDC3O75056 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SDC3O75056 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC3O75056 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC3O75056 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SDC3O75056 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SDC3O75056 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SDC3O75056 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SDC3O75056 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SDC3O75056 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SDC3O75056 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.79■□□□□ 0.92
SDC3O75056 SLC7A5P1-201ENST00000568957 537 ntBASIC20.79■□□□□ 0.92
SDC3O75056 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
SDC3O75056 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.79■□□□□ 0.92
SDC3O75056 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.79■□□□□ 0.92
SDC3O75056 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.79■□□□□ 0.92
SDC3O75056 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SDC3O75056 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SDC3O75056 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SDC3O75056 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDC3O75056 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.78■□□□□ 0.92
SDC3O75056 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SDC3O75056 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.78■□□□□ 0.92
SDC3O75056 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDC3O75056 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.78■□□□□ 0.92
SDC3O75056 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SDC3O75056 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDC3O75056 MKRN4P-201ENST00000444706 1521 ntBASIC20.78■□□□□ 0.92
SDC3O75056 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDC3O75056 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SDC3O75056 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SDC3O75056 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SDC3O75056 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SDC3O75056 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
SDC3O75056 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SDC3O75056 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.77■□□□□ 0.92
SDC3O75056 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SDC3O75056 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SDC3O75056 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.77■□□□□ 0.92
SDC3O75056 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SDC3O75056 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.77■□□□□ 0.92
SDC3O75056 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms