Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SNX3O60493 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SNX3O60493 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SNX3O60493 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.98■□□□□ 0.95
SNX3O60493 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.98■□□□□ 0.95
SNX3O60493 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SNX3O60493 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SNX3O60493 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SNX3O60493 AC087289.5-201ENST00000586076 3175 ntBASIC20.98■□□□□ 0.95
SNX3O60493 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SNX3O60493 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SNX3O60493 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
SNX3O60493 AL020996.1-203ENST00000536896 2307 ntBASIC20.98■□□□□ 0.95
SNX3O60493 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.97■□□□□ 0.95
SNX3O60493 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SNX3O60493 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
SNX3O60493 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SNX3O60493 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SNX3O60493 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SNX3O60493 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.97■□□□□ 0.95
SNX3O60493 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.97■□□□□ 0.95
SNX3O60493 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SNX3O60493 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SNX3O60493 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.97■□□□□ 0.95
SNX3O60493 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SNX3O60493 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SNX3O60493 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SNX3O60493 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SNX3O60493 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SNX3O60493 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SNX3O60493 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.96■□□□□ 0.95
SNX3O60493 AC006128.1-201ENST00000624704 1661 ntBASIC20.96■□□□□ 0.95
SNX3O60493 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SNX3O60493 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
SNX3O60493 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SNX3O60493 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SNX3O60493 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SNX3O60493 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SNX3O60493 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.96■□□□□ 0.95
SNX3O60493 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.96■□□□□ 0.95
SNX3O60493 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.96■□□□□ 0.95
SNX3O60493 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SNX3O60493 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.96■□□□□ 0.95
SNX3O60493 AC129492.7-201ENST00000622992 756 ntBASIC20.96■□□□□ 0.95
SNX3O60493 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SNX3O60493 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SNX3O60493 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SNX3O60493 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.96■□□□□ 0.95
SNX3O60493 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
SNX3O60493 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
SNX3O60493 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
SNX3O60493 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
SNX3O60493 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SNX3O60493 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SNX3O60493 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SNX3O60493 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SNX3O60493 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.95■□□□□ 0.94
SNX3O60493 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SNX3O60493 RNF126P1-201ENST00000567452 1320 ntBASIC20.95■□□□□ 0.94
SNX3O60493 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SNX3O60493 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SNX3O60493 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.95■□□□□ 0.94
SNX3O60493 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SNX3O60493 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SNX3O60493 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
SNX3O60493 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SNX3O60493 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SNX3O60493 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.94■□□□□ 0.94
SNX3O60493 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.94■□□□□ 0.94
SNX3O60493 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SNX3O60493 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SNX3O60493 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.94■□□□□ 0.94
SNX3O60493 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SNX3O60493 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.94■□□□□ 0.94
SNX3O60493 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SNX3O60493 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SNX3O60493 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.94■□□□□ 0.94
SNX3O60493 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SNX3O60493 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SNX3O60493 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SNX3O60493 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SNX3O60493 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.93■□□□□ 0.94
SNX3O60493 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.93■□□□□ 0.94
SNX3O60493 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SNX3O60493 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SNX3O60493 AC079089.2-201ENST00000531211 1277 ntBASIC20.93■□□□□ 0.94
SNX3O60493 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.93■□□□□ 0.94
SNX3O60493 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.93■□□□□ 0.94
SNX3O60493 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SNX3O60493 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.93■□□□□ 0.94
SNX3O60493 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
SNX3O60493 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SNX3O60493 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.93■□□□□ 0.94
SNX3O60493 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SNX3O60493 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SNX3O60493 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SNX3O60493 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SNX3O60493 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNX3O60493 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNX3O60493 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms