Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.16■□□□□ 0.66
SSX4O60224 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSX4O60224 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.15■□□□□ 0.66
SSX4O60224 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SSX4O60224 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSX4O60224 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSX4O60224 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.15■□□□□ 0.66
SSX4O60224 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSX4O60224 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.15■□□□□ 0.66
SSX4O60224 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SSX4O60224 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.15■□□□□ 0.66
SSX4O60224 AC009086.3-201ENST00000623486 1008 ntBASIC19.15■□□□□ 0.66
SSX4O60224 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSX4O60224 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.15■□□□□ 0.66
SSX4O60224 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
SSX4O60224 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.15■□□□□ 0.66
SSX4O60224 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SSX4O60224 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.15■□□□□ 0.66
SSX4O60224 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SSX4O60224 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SSX4O60224 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
SSX4O60224 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
SSX4O60224 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SSX4O60224 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSX4O60224 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSX4O60224 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.14■□□□□ 0.65
SSX4O60224 AC006455.2-201ENST00000429931 906 ntBASIC19.14■□□□□ 0.65
SSX4O60224 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SSX4O60224 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SSX4O60224 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.14■□□□□ 0.65
SSX4O60224 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSX4O60224 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SSX4O60224 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.14■□□□□ 0.65
SSX4O60224 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.14■□□□□ 0.65
SSX4O60224 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSX4O60224 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.13■□□□□ 0.65
SSX4O60224 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SSX4O60224 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSX4O60224 IRS3P-201ENST00000223076 1006 ntBASIC19.13■□□□□ 0.65
SSX4O60224 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SSX4O60224 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SSX4O60224 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.13■□□□□ 0.65
SSX4O60224 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.13■□□□□ 0.65
SSX4O60224 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.13■□□□□ 0.65
SSX4O60224 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.13■□□□□ 0.65
SSX4O60224 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.13■□□□□ 0.65
SSX4O60224 MIR6821-201ENST00000617625 74 ntBASIC19.13■□□□□ 0.65
SSX4O60224 AC136469.2-201ENST00000623944 1028 ntBASIC19.13■□□□□ 0.65
SSX4O60224 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SSX4O60224 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.13■□□□□ 0.65
SSX4O60224 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.13■□□□□ 0.65
SSX4O60224 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSX4O60224 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSX4O60224 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
SSX4O60224 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSX4O60224 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSX4O60224 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.13■□□□□ 0.65
SSX4O60224 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSX4O60224 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SSX4O60224 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
SSX4O60224 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.12■□□□□ 0.65
SSX4O60224 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SSX4O60224 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.12■□□□□ 0.65
SSX4O60224 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SSX4O60224 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SSX4O60224 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SSX4O60224 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SSX4O60224 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SSX4O60224 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.12■□□□□ 0.65
SSX4O60224 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.12■□□□□ 0.65
SSX4O60224 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SSX4O60224 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SSX4O60224 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SSX4O60224 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.11■□□□□ 0.65
SSX4O60224 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
SSX4O60224 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX4O60224 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX4O60224 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SSX4O60224 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SSX4O60224 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SSX4O60224 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX4O60224 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX4O60224 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.11■□□□□ 0.65
SSX4O60224 AC097381.1-201ENST00000429019 1296 ntBASIC19.11■□□□□ 0.65
SSX4O60224 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.11■□□□□ 0.65
SSX4O60224 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.11■□□□□ 0.65
SSX4O60224 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.11■□□□□ 0.65
SSX4O60224 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.11■□□□□ 0.65
SSX4O60224 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX4O60224 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SSX4O60224 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SSX4O60224 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX4O60224 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX4O60224 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX4O60224 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SSX4O60224 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX4O60224 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.11■□□□□ 0.65
SSX4O60224 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
SSX4O60224 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms