Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC24■■□□□ 1.43
MSH4O15457 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
MSH4O15457 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
MSH4O15457 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
MSH4O15457 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH4O15457 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH4O15457 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
MSH4O15457 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC23.99■■□□□ 1.43
MSH4O15457 DBI-210ENST00000542275 757 ntTSL 5 BASIC23.99■■□□□ 1.43
MSH4O15457 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC23.99■■□□□ 1.43
MSH4O15457 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC23.99■■□□□ 1.43
MSH4O15457 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC23.99■■□□□ 1.43
MSH4O15457 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC23.99■■□□□ 1.43
MSH4O15457 AC053503.5-201ENST00000601508 636 ntBASIC23.99■■□□□ 1.43
MSH4O15457 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH4O15457 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
MSH4O15457 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH4O15457 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
MSH4O15457 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
MSH4O15457 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH4O15457 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC23.98■■□□□ 1.43
MSH4O15457 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH4O15457 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH4O15457 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH4O15457 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
MSH4O15457 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.98■■□□□ 1.43
MSH4O15457 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC23.98■■□□□ 1.43
MSH4O15457 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH4O15457 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH4O15457 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
MSH4O15457 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH4O15457 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH4O15457 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH4O15457 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.97■■□□□ 1.43
MSH4O15457 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
MSH4O15457 MYB-221ENST00000527615 2381 ntTSL 5 BASIC23.97■■□□□ 1.43
MSH4O15457 AC138907.5-202ENST00000569484 235 ntBASIC23.97■■□□□ 1.43
MSH4O15457 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC23.97■■□□□ 1.43
MSH4O15457 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
MSH4O15457 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.97■■□□□ 1.43
MSH4O15457 ME2-206ENST00000638410 2289 ntTSL 5 BASIC23.97■■□□□ 1.43
MSH4O15457 ME2-210ENST00000639255 2262 ntTSL 5 BASIC23.97■■□□□ 1.43
MSH4O15457 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
MSH4O15457 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH4O15457 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
MSH4O15457 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
MSH4O15457 RNF146-206ENST00000480444 843 ntTSL 2 BASIC23.96■■□□□ 1.43
MSH4O15457 AC137761.2-201ENST00000561729 223 ntBASIC23.96■■□□□ 1.43
MSH4O15457 AC145350.3-201ENST00000569033 163 ntBASIC23.96■■□□□ 1.43
MSH4O15457 AP001160.3-201ENST00000601484 763 ntBASIC23.96■■□□□ 1.43
MSH4O15457 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH4O15457 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH4O15457 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.96■■□□□ 1.43
MSH4O15457 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC23.96■■□□□ 1.43
MSH4O15457 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.43
MSH4O15457 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC23.95■■□□□ 1.43
MSH4O15457 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC23.95■■□□□ 1.43
MSH4O15457 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
MSH4O15457 AC006015.1-201ENST00000429970 570 ntBASIC23.95■■□□□ 1.42
MSH4O15457 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC23.95■■□□□ 1.42
MSH4O15457 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
MSH4O15457 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC23.95■■□□□ 1.42
MSH4O15457 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.95■■□□□ 1.42
MSH4O15457 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.95■■□□□ 1.42
MSH4O15457 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH4O15457 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
MSH4O15457 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH4O15457 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
MSH4O15457 HSCB-202ENST00000398941 955 ntTSL 2 BASIC23.94■■□□□ 1.42
MSH4O15457 AC010141.2-201ENST00000452426 721 ntBASIC23.94■■□□□ 1.42
MSH4O15457 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC23.94■■□□□ 1.42
MSH4O15457 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
MSH4O15457 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
MSH4O15457 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH4O15457 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC23.93■■□□□ 1.42
MSH4O15457 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
MSH4O15457 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH4O15457 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC23.93■■□□□ 1.42
MSH4O15457 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC23.93■■□□□ 1.42
MSH4O15457 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH4O15457 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
MSH4O15457 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC23.93■■□□□ 1.42
MSH4O15457 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.93■■□□□ 1.42
MSH4O15457 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH4O15457 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC23.93■■□□□ 1.42
MSH4O15457 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC23.93■■□□□ 1.42
MSH4O15457 AL137784.2-201ENST00000607332 1000 ntBASIC23.93■■□□□ 1.42
MSH4O15457 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH4O15457 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH4O15457 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
MSH4O15457 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH4O15457 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.93■■□□□ 1.42
MSH4O15457 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
MSH4O15457 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
MSH4O15457 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
MSH4O15457 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms