Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A5A8TX70 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.79■□□□□ 0.28
COL6A5A8TX70 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
COL6A5A8TX70 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.79■□□□□ 0.28
COL6A5A8TX70 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A5A8TX70 AC060766.5-201ENST00000590539 871 ntBASIC16.79■□□□□ 0.28
COL6A5A8TX70 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A5A8TX70 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A5A8TX70 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A5A8TX70 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
COL6A5A8TX70 NTF6B-201ENST00000591913 560 ntBASIC16.78■□□□□ 0.28
COL6A5A8TX70 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A5A8TX70 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A5A8TX70 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A5A8TX70 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A5A8TX70 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC16.78■□□□□ 0.28
COL6A5A8TX70 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
COL6A5A8TX70 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC16.78■□□□□ 0.28
COL6A5A8TX70 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A5A8TX70 HES2-205ENST00000487437 968 ntTSL 3 BASIC16.78■□□□□ 0.28
COL6A5A8TX70 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A5A8TX70 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A5A8TX70 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A5A8TX70 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A5A8TX70 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A5A8TX70 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A5A8TX70 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A5A8TX70 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
COL6A5A8TX70 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A5A8TX70 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.27
COL6A5A8TX70 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A5A8TX70 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A5A8TX70 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
COL6A5A8TX70 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A5A8TX70 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.27
COL6A5A8TX70 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
COL6A5A8TX70 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A5A8TX70 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A5A8TX70 UPK3BP1-201ENST00000428678 509 ntBASIC16.76■□□□□ 0.27
COL6A5A8TX70 AC145285.6-201ENST00000604632 637 ntBASIC16.76■□□□□ 0.27
COL6A5A8TX70 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A5A8TX70 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A5A8TX70 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A5A8TX70 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
COL6A5A8TX70 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A5A8TX70 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A5A8TX70 ST7-202ENST00000323984 2142 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A5A8TX70 ST7-207ENST00000393449 2127 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A5A8TX70 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC16.76■□□□□ 0.27
COL6A5A8TX70 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A5A8TX70 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A5A8TX70 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A5A8TX70 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL6A5A8TX70 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
COL6A5A8TX70 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A5A8TX70 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC16.75■□□□□ 0.27
COL6A5A8TX70 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A5A8TX70 POM121L13P-201ENST00000422362 380 ntBASIC16.75■□□□□ 0.27
COL6A5A8TX70 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A5A8TX70 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A5A8TX70 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
COL6A5A8TX70 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC16.75■□□□□ 0.27
COL6A5A8TX70 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC16.75■□□□□ 0.27
COL6A5A8TX70 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC16.75■□□□□ 0.27
COL6A5A8TX70 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC16.75■□□□□ 0.27
COL6A5A8TX70 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A5A8TX70 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A5A8TX70 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A5A8TX70 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A5A8TX70 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
COL6A5A8TX70 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A5A8TX70 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
COL6A5A8TX70 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A5A8TX70 AP003071.4-201ENST00000562276 1284 ntBASIC16.74■□□□□ 0.27
COL6A5A8TX70 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A5A8TX70 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
COL6A5A8TX70 HLA-B-256ENST00000639848 1089 ntBASIC16.74■□□□□ 0.27
COL6A5A8TX70 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A5A8TX70 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A5A8TX70 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
COL6A5A8TX70 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A5A8TX70 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A5A8TX70 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A5A8TX70 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A5A8TX70 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A5A8TX70 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A5A8TX70 KRT126P-201ENST00000549467 1181 ntBASIC16.74■□□□□ 0.27
COL6A5A8TX70 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A5A8TX70 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A5A8TX70 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A5A8TX70 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A5A8TX70 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A5A8TX70 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A5A8TX70 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A5A8TX70 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.73■□□□□ 0.27
COL6A5A8TX70 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A5A8TX70 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A5A8TX70 TK2-204ENST00000525974 1178 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A5A8TX70 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A5A8TX70 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms