Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CPSF4LA6NMK7 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CPSF4LA6NMK7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CPSF4LA6NMK7 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CPSF4LA6NMK7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 AP005435.1-201ENST00000529293 1178 ntBASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4LA6NMK7 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CPSF4LA6NMK7 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CPSF4LA6NMK7 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CPSF4LA6NMK7 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CPSF4LA6NMK7 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CPSF4LA6NMK7 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.58■□□□□ 0.72
CPSF4LA6NMK7 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.58■□□□□ 0.72
CPSF4LA6NMK7 AL034346.1-201ENST00000568244 1277 ntBASIC19.58■□□□□ 0.72
CPSF4LA6NMK7 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CPSF4LA6NMK7 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CPSF4LA6NMK7 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.58■□□□□ 0.72
CPSF4LA6NMK7 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.58■□□□□ 0.72
CPSF4LA6NMK7 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CPSF4LA6NMK7 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4LA6NMK7 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4LA6NMK7 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CPSF4LA6NMK7 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CPSF4LA6NMK7 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CPSF4LA6NMK7 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CPSF4LA6NMK7 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.55■□□□□ 0.72
CPSF4LA6NMK7 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CPSF4LA6NMK7 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.55■□□□□ 0.72
CPSF4LA6NMK7 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.55■□□□□ 0.72
CPSF4LA6NMK7 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.55■□□□□ 0.72
CPSF4LA6NMK7 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CPSF4LA6NMK7 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CPSF4LA6NMK7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CPSF4LA6NMK7 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4LA6NMK7 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4LA6NMK7 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4LA6NMK7 AL024507.2-201ENST00000606070 2574 ntBASIC19.54■□□□□ 0.72
CPSF4LA6NMK7 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4LA6NMK7 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CPSF4LA6NMK7 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
CPSF4LA6NMK7 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CPSF4LA6NMK7 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.54■□□□□ 0.72
CPSF4LA6NMK7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms