Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC163A0A0D9SF12 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC163A0A0D9SF12 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC163A0A0D9SF12 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC163A0A0D9SF12 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 RBM17P2-201ENST00000616397 1405 ntBASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC163A0A0D9SF12 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 AC020928.2-201ENST00000588717 2197 ntBASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 AL596275.1-201ENST00000423464 877 ntBASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC163A0A0D9SF12 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC163A0A0D9SF12 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
CCDC163A0A0D9SF12 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC163A0A0D9SF12 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 AP003097.1-201ENST00000530657 1135 ntBASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 ANOS2P-203ENST00000472227 1816 ntBASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC163A0A0D9SF12 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 UBE2SP1-201ENST00000450587 669 ntBASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 UNC93B4-201ENST00000505679 747 ntBASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC163A0A0D9SF12 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms