Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 BX842568.3-201ENST00000418104 571 ntBASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 AC126544.1-201ENST00000580842 1059 ntBASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 PALM-208ENST00000592155 2272 ntTSL 4 BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAV39A0A0B4J263 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 TUB-203ENST00000534099 1759 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 AC233992.3-201ENST00000607491 485 ntBASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAV39A0A0B4J263 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRAV39A0A0B4J263 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV39A0A0B4J263 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.77■□□□□ 0.44
TRAV39A0A0B4J263 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.77■□□□□ 0.44
TRAV39A0A0B4J263 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV39A0A0B4J263 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV39A0A0B4J263 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV39A0A0B4J263 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC17.77■□□□□ 0.44
TRAV39A0A0B4J263 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.77■□□□□ 0.44
TRAV39A0A0B4J263 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV39A0A0B4J263 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV39A0A0B4J263 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC17.77■□□□□ 0.44
TRAV39A0A0B4J263 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRAV39A0A0B4J263 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.43
TRAV39A0A0B4J263 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRAV39A0A0B4J263 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TRAV39A0A0B4J263 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC17.77■□□□□ 0.43
TRAV39A0A0B4J263 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.77■□□□□ 0.43
TRAV39A0A0B4J263 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TRAV39A0A0B4J263 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV39A0A0B4J263 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TRAV39A0A0B4J263 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV39A0A0B4J263 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV39A0A0B4J263 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.76■□□□□ 0.43
TRAV39A0A0B4J263 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.76■□□□□ 0.43
TRAV39A0A0B4J263 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC17.76■□□□□ 0.43
TRAV39A0A0B4J263 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV39A0A0B4J263 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 FEM1AP4-201ENST00000443167 1987 ntBASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 AC099791.1-201ENST00000416440 715 ntBASIC17.75■□□□□ 0.43
TRAV39A0A0B4J263 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms