Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC22.29■■□□□ 1.16
PCDHA3Q9Y5H8 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
PCDHA3Q9Y5H8 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC22.29■■□□□ 1.16
PCDHA3Q9Y5H8 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHA3Q9Y5H8 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC22.29■■□□□ 1.16
PCDHA3Q9Y5H8 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC22.29■■□□□ 1.16
PCDHA3Q9Y5H8 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHA3Q9Y5H8 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC22.29■■□□□ 1.16
PCDHA3Q9Y5H8 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHA3Q9Y5H8 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHA3Q9Y5H8 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHA3Q9Y5H8 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC22.27■■□□□ 1.16
PCDHA3Q9Y5H8 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
PCDHA3Q9Y5H8 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHA3Q9Y5H8 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC22.27■■□□□ 1.16
PCDHA3Q9Y5H8 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC22.27■■□□□ 1.16
PCDHA3Q9Y5H8 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.27■■□□□ 1.16
PCDHA3Q9Y5H8 SLC25A24-204ENST00000569674 2357 ntBASIC22.27■■□□□ 1.16
PCDHA3Q9Y5H8 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHA3Q9Y5H8 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHA3Q9Y5H8 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHA3Q9Y5H8 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
PCDHA3Q9Y5H8 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC22.27■■□□□ 1.15
PCDHA3Q9Y5H8 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
PCDHA3Q9Y5H8 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHA3Q9Y5H8 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHA3Q9Y5H8 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHA3Q9Y5H8 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHA3Q9Y5H8 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHA3Q9Y5H8 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHA3Q9Y5H8 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHA3Q9Y5H8 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHA3Q9Y5H8 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC22.26■■□□□ 1.15
PCDHA3Q9Y5H8 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHA3Q9Y5H8 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
PCDHA3Q9Y5H8 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
PCDHA3Q9Y5H8 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
PCDHA3Q9Y5H8 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC22.25■■□□□ 1.15
PCDHA3Q9Y5H8 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHA3Q9Y5H8 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC22.25■■□□□ 1.15
PCDHA3Q9Y5H8 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.25■■□□□ 1.15
PCDHA3Q9Y5H8 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHA3Q9Y5H8 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHA3Q9Y5H8 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHA3Q9Y5H8 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
PCDHA3Q9Y5H8 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC22.25■■□□□ 1.15
PCDHA3Q9Y5H8 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHA3Q9Y5H8 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHA3Q9Y5H8 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHA3Q9Y5H8 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
PCDHA3Q9Y5H8 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
PCDHA3Q9Y5H8 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHA3Q9Y5H8 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC22.24■■□□□ 1.15
PCDHA3Q9Y5H8 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHA3Q9Y5H8 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHA3Q9Y5H8 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
PCDHA3Q9Y5H8 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC22.24■■□□□ 1.15
PCDHA3Q9Y5H8 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHA3Q9Y5H8 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 AC073130.3-201ENST00000624389 2278 ntBASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHA3Q9Y5H8 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHA3Q9Y5H8 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms