Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.3■□□□□ 0.84
PIF1Q9H611 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PIF1Q9H611 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PIF1Q9H611 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PIF1Q9H611 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PIF1Q9H611 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.3■□□□□ 0.84
PIF1Q9H611 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.3■□□□□ 0.84
PIF1Q9H611 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.3■□□□□ 0.84
PIF1Q9H611 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.3■□□□□ 0.84
PIF1Q9H611 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PIF1Q9H611 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
PIF1Q9H611 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PIF1Q9H611 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
PIF1Q9H611 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.3■□□□□ 0.84
PIF1Q9H611 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PIF1Q9H611 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PIF1Q9H611 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.3■□□□□ 0.84
PIF1Q9H611 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PIF1Q9H611 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PIF1Q9H611 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PIF1Q9H611 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PIF1Q9H611 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
PIF1Q9H611 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PIF1Q9H611 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PIF1Q9H611 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
PIF1Q9H611 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.29■□□□□ 0.84
PIF1Q9H611 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.29■□□□□ 0.84
PIF1Q9H611 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.29■□□□□ 0.84
PIF1Q9H611 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.29■□□□□ 0.84
PIF1Q9H611 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
PIF1Q9H611 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PIF1Q9H611 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.29■□□□□ 0.84
PIF1Q9H611 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PIF1Q9H611 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PIF1Q9H611 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PIF1Q9H611 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PIF1Q9H611 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.29■□□□□ 0.84
PIF1Q9H611 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PIF1Q9H611 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PIF1Q9H611 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
PIF1Q9H611 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PIF1Q9H611 UNC93B8-201ENST00000511903 705 ntBASIC20.28■□□□□ 0.84
PIF1Q9H611 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.28■□□□□ 0.84
PIF1Q9H611 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
PIF1Q9H611 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
PIF1Q9H611 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
PIF1Q9H611 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.28■□□□□ 0.84
PIF1Q9H611 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PIF1Q9H611 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PIF1Q9H611 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PIF1Q9H611 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PIF1Q9H611 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PIF1Q9H611 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.27■□□□□ 0.84
PIF1Q9H611 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PIF1Q9H611 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PIF1Q9H611 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PIF1Q9H611 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PIF1Q9H611 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.84
PIF1Q9H611 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PIF1Q9H611 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PIF1Q9H611 MIR6724-1-201ENST00000616420 92 ntBASIC20.27■□□□□ 0.84
PIF1Q9H611 MIR6724-2-201ENST00000616483 92 ntBASIC20.27■□□□□ 0.84
PIF1Q9H611 MIR6724-4-201ENST00000617390 92 ntBASIC20.27■□□□□ 0.84
PIF1Q9H611 MIR6724-3-201ENST00000622482 92 ntBASIC20.27■□□□□ 0.84
PIF1Q9H611 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.27■□□□□ 0.83
PIF1Q9H611 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
PIF1Q9H611 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PIF1Q9H611 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PIF1Q9H611 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
PIF1Q9H611 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PIF1Q9H611 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PIF1Q9H611 AC079089.2-201ENST00000531211 1277 ntBASIC20.26■□□□□ 0.83
PIF1Q9H611 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PIF1Q9H611 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PIF1Q9H611 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.26■□□□□ 0.83
PIF1Q9H611 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PIF1Q9H611 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PIF1Q9H611 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PIF1Q9H611 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PIF1Q9H611 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PIF1Q9H611 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
PIF1Q9H611 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.25■□□□□ 0.83
PIF1Q9H611 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PIF1Q9H611 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PIF1Q9H611 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PIF1Q9H611 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PIF1Q9H611 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PIF1Q9H611 KRT16P3-201ENST00000439127 1283 ntBASIC20.25■□□□□ 0.83
PIF1Q9H611 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
PIF1Q9H611 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.25■□□□□ 0.83
PIF1Q9H611 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PIF1Q9H611 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PIF1Q9H611 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PIF1Q9H611 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.24■□□□□ 0.83
PIF1Q9H611 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.24■□□□□ 0.83
PIF1Q9H611 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PIF1Q9H611 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PIF1Q9H611 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
PIF1Q9H611 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PIF1Q9H611 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms