Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.31■■□□□ 1
CPNE1Q99829 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
CPNE1Q99829 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
CPNE1Q99829 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.3■■□□□ 1
CPNE1Q99829 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CPNE1Q99829 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.3■■□□□ 1
CPNE1Q99829 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CPNE1Q99829 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.3■■□□□ 1
CPNE1Q99829 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CPNE1Q99829 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.3■■□□□ 1
CPNE1Q99829 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CPNE1Q99829 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.3■■□□□ 1
CPNE1Q99829 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
CPNE1Q99829 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.3■■□□□ 1
CPNE1Q99829 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.3■■□□□ 1
CPNE1Q99829 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.3■■□□□ 1
CPNE1Q99829 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
CPNE1Q99829 AC003102.1-202ENST00000563394 1796 ntBASIC21.3■■□□□ 1
CPNE1Q99829 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.3■■□□□ 1
CPNE1Q99829 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CPNE1Q99829 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
CPNE1Q99829 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CPNE1Q99829 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
CPNE1Q99829 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CPNE1Q99829 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CPNE1Q99829 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CPNE1Q99829 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.29■■□□□ 1
CPNE1Q99829 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.29■■□□□ 1
CPNE1Q99829 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.29■■□□□ 1
CPNE1Q99829 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
CPNE1Q99829 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.29■■□□□ 1
CPNE1Q99829 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CPNE1Q99829 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CPNE1Q99829 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CPNE1Q99829 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.29■■□□□ 1
CPNE1Q99829 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CPNE1Q99829 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CPNE1Q99829 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.28■■□□□ 1
CPNE1Q99829 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CPNE1Q99829 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.28■■□□□ 1
CPNE1Q99829 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.28■■□□□ 1
CPNE1Q99829 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CPNE1Q99829 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CPNE1Q99829 AC131281.2-201ENST00000520478 145 ntBASIC21.28■■□□□ 1
CPNE1Q99829 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.28■■□□□ 1
CPNE1Q99829 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CPNE1Q99829 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CPNE1Q99829 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CPNE1Q99829 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CPNE1Q99829 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.28■■□□□ 1
CPNE1Q99829 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.28■■□□□ 1
CPNE1Q99829 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.27■■□□□ 1
CPNE1Q99829 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.27■■□□□ 1
CPNE1Q99829 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.27■■□□□ 1
CPNE1Q99829 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.27■■□□□ 1
CPNE1Q99829 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CPNE1Q99829 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CPNE1Q99829 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CPNE1Q99829 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.27■■□□□ 1
CPNE1Q99829 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CPNE1Q99829 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CPNE1Q99829 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CPNE1Q99829 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.27■■□□□ 1
CPNE1Q99829 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.27■□□□□ 0.99
CPNE1Q99829 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
CPNE1Q99829 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.27■□□□□ 0.99
CPNE1Q99829 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CPNE1Q99829 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE1Q99829 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE1Q99829 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.26■□□□□ 0.99
CPNE1Q99829 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE1Q99829 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE1Q99829 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CPNE1Q99829 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE1Q99829 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.26■□□□□ 0.99
CPNE1Q99829 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE1Q99829 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE1Q99829 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE1Q99829 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CPNE1Q99829 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.26■□□□□ 0.99
CPNE1Q99829 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE1Q99829 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE1Q99829 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CPNE1Q99829 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.25■□□□□ 0.99
CPNE1Q99829 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CPNE1Q99829 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPNE1Q99829 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPNE1Q99829 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.25■□□□□ 0.99
CPNE1Q99829 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.25■□□□□ 0.99
CPNE1Q99829 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.25■□□□□ 0.99
CPNE1Q99829 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.25■□□□□ 0.99
CPNE1Q99829 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPNE1Q99829 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.25■□□□□ 0.99
CPNE1Q99829 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPNE1Q99829 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.25■□□□□ 0.99
CPNE1Q99829 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.25■□□□□ 0.99
CPNE1Q99829 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPNE1Q99829 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CPNE1Q99829 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPNE1Q99829 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms