Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD1Q96NR3 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD1Q96NR3 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD1Q96NR3 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD1Q96NR3 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD1Q96NR3 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.11■□□□□ 0.81
PTCHD1Q96NR3 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
PTCHD1Q96NR3 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD1Q96NR3 AC079140.4-201ENST00000507448 529 ntBASIC20.11■□□□□ 0.81
PTCHD1Q96NR3 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD1Q96NR3 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.11■□□□□ 0.81
PTCHD1Q96NR3 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD1Q96NR3 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD1Q96NR3 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 NTF6G-201ENST00000591094 616 ntBASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.1■□□□□ 0.81
PTCHD1Q96NR3 AC055733.4-201ENST00000638462 1354 ntBASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 KRT18P5-201ENST00000436075 1291 ntBASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTCHD1Q96NR3 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 AP006587.3-201ENST00000525742 1516 ntBASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PTCHD1Q96NR3 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
PTCHD1Q96NR3 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PTCHD1Q96NR3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
PTCHD1Q96NR3 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
PTCHD1Q96NR3 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTCHD1Q96NR3 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.06■□□□□ 0.8
PTCHD1Q96NR3 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms