Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.17■■□□□ 1.14
CCHCR1Q8TD31 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC22.17■■□□□ 1.14
CCHCR1Q8TD31 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCHCR1Q8TD31 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCHCR1Q8TD31 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCHCR1Q8TD31 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 EI24-211ENST00000534546 1544 ntTSL 2 BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 MTURN-203ENST00000409688 843 ntTSL 2 BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 AC073130.3-201ENST00000624389 2278 ntBASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCHCR1Q8TD31 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 OR7E47P-201ENST00000546390 1422 ntBASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCHCR1Q8TD31 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCHCR1Q8TD31 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC22.14■■□□□ 1.14
CCHCR1Q8TD31 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCHCR1Q8TD31 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCHCR1Q8TD31 AC104564.3-201ENST00000582367 638 ntBASIC22.14■■□□□ 1.13
CCHCR1Q8TD31 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCHCR1Q8TD31 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCHCR1Q8TD31 ME2-206ENST00000638410 2289 ntTSL 5 BASIC22.14■■□□□ 1.13
CCHCR1Q8TD31 ME2-210ENST00000639255 2262 ntTSL 5 BASIC22.14■■□□□ 1.13
CCHCR1Q8TD31 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CCHCR1Q8TD31 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 AC133561.4-201ENST00000566112 224 ntBASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 MIR4767-201ENST00000582827 78 ntBASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 AC005229.4-201ENST00000610085 2198 ntBASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC22.13■■□□□ 1.13
CCHCR1Q8TD31 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 STX4-202ENST00000394998 1498 ntTSL 2 BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CCHCR1Q8TD31 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCHCR1Q8TD31 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCHCR1Q8TD31 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CCHCR1Q8TD31 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CCHCR1Q8TD31 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.11■■□□□ 1.13
CCHCR1Q8TD31 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.11■■□□□ 1.13
CCHCR1Q8TD31 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC22.11■■□□□ 1.13
CCHCR1Q8TD31 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.11■■□□□ 1.13
CCHCR1Q8TD31 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC22.11■■□□□ 1.13
CCHCR1Q8TD31 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCHCR1Q8TD31 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCHCR1Q8TD31 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC22.11■■□□□ 1.13
CCHCR1Q8TD31 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CCHCR1Q8TD31 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCHCR1Q8TD31 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCHCR1Q8TD31 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms