Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.022e-18■■■□□ 16.4
DDX55Q8NHQ9 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC14.58□□□□□ -0.082e-18■■■□□ 16.4
DDX55Q8NHQ9 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.082e-18■■■□□ 16.4
DDX55Q8NHQ9 ZNF692-205ENST00000462037 827 ntTSL 215.7■□□□□ 0.17e-40■■■□□ 16.4
DDX55Q8NHQ9 ZNF692-213ENST00000482023 851 ntTSL 513.48□□□□□ -0.257e-40■■■□□ 16.4
DDX55Q8NHQ9 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.371e-8■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-217ENST00000526786 1246 ntTSL 228.06■■■□□ 2.081e-13■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC27.91■■■□□ 2.067e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC27.63■■■□□ 2.017e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC25.02■■□□□ 1.67e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.497e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.297e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC22.85■■□□□ 1.257e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC22.38■■□□□ 1.177e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.39■■□□□ 1.027e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-206ENST00000524397 957 ntTSL 321.15■□□□□ 0.987e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC21.15■□□□□ 0.987e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-224ENST00000529007 861 ntTSL 221.15■□□□□ 0.987e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.947e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-250ENST00000533833 831 ntTSL 520.56■□□□□ 0.887e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.817e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.757e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-230ENST00000530191 853 ntTSL 318.86■□□□□ 0.611e-13■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-252ENST00000534377 617 ntTSL 218.2■□□□□ 0.51e-13■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.427e-14■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-247ENST00000533204 842 ntTSL 216.93■□□□□ 0.31e-13■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-236ENST00000531218 787 ntTSL 316.73■□□□□ 0.271e-13■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-234ENST00000530616 749 ntTSL 316.73■□□□□ 0.271e-13■■■□□ 16.4
DDX55Q8NHQ9 EEF1D-253ENST00000534380 1001 ntTSL 516.73■□□□□ 0.277e-14■■■□□ 16.4
DDX55Q8NHQ9 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.956e-12■■■□□ 16.4
DDX55Q8NHQ9 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.62e-6■■■□□ 16.4
DDX55Q8NHQ9 ATP5G3-205ENST00000497075 1313 ntTSL 216.71■□□□□ 0.276e-12■■■□□ 16.4
DDX55Q8NHQ9 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.132e-6■■■□□ 16.4
DDX55Q8NHQ9 ATP5G3-201ENST00000284727 5484 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.596e-12■■■□□ 16.4
DDX55Q8NHQ9 ATP5G3-203ENST00000409194 795 ntAPPRIS P1 TSL 2 BASIC10.54□□□□□ -0.726e-12■■■□□ 16.4
DDX55Q8NHQ9 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.61e-7■■■□□ 16.3
DDX55Q8NHQ9 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.661e-7■■■□□ 16.3
DDX55Q8NHQ9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.132e-6■■■□□ 16.3
DDX55Q8NHQ9 IDH1-203ENST00000415913 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.272e-6■■■□□ 16.3
DDX55Q8NHQ9 IDH1-201ENST00000345146 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.472e-6■■■□□ 16.3
DDX55Q8NHQ9 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.181e-7■■■□□ 16.3
DDX55Q8NHQ9 NME1-210ENST00000512768 1056 ntTSL 1 (best)21.06■□□□□ 0.961e-6■■■□□ 16.3
DDX55Q8NHQ9 SEC23B-201ENST00000262544 3176 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.274e-6■■■□□ 16.3
DDX55Q8NHQ9 SEC23B-203ENST00000377465 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.464e-6■■■□□ 16.3
DDX55Q8NHQ9 SEC23B-204ENST00000377475 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.514e-6■■■□□ 16.3
DDX55Q8NHQ9 SEC23B-202ENST00000336714 3411 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.534e-6■■■□□ 16.3
DDX55Q8NHQ9 TM9SF2-201ENST00000376387 3430 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.518e-8■■■□□ 16.3
DDX55Q8NHQ9 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.441e-12■■■□□ 16.3
DDX55Q8NHQ9 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC16.5■□□□□ 0.231e-12■■■□□ 16.3
DDX55Q8NHQ9 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC16.29■□□□□ 0.21e-12■■■□□ 16.3
DDX55Q8NHQ9 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.151e-12■■■□□ 16.3
DDX55Q8NHQ9 HERPUD1-209ENST00000564678 2199 ntTSL 1 (best)7.84□□□□□ -1.151e-12■■■□□ 16.3
DDX55Q8NHQ9 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.513e-14■■■□□ 16.3
DDX55Q8NHQ9 PPP6R1-204ENST00000587457 2389 ntTSL 216.86■□□□□ 0.293e-14■■■□□ 16.3
DDX55Q8NHQ9 AC010327.5-201ENST00000586923 3061 ntBASIC15.35■□□□□ 0.053e-14■■■□□ 16.3
DDX55Q8NHQ9 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.381e-22■■■□□ 16.3
DDX55Q8NHQ9 GLG1-213ENST00000567951 2918 ntTSL 1 (best)20.11■□□□□ 0.812e-6■■■□□ 16.3
DDX55Q8NHQ9 GLG1-206ENST00000562090 4037 ntTSL 214.95□□□□□ -0.022e-6■■■□□ 16.3
DDX55Q8NHQ9 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.874e-7■■■□□ 16.3
DDX55Q8NHQ9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.994e-7■■■□□ 16.3
DDX55Q8NHQ9 PKP4-201ENST00000389757 5777 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.684e-6■■■□□ 16.3
DDX55Q8NHQ9 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC9.56□□□□□ -0.884e-6■■■□□ 16.3
DDX55Q8NHQ9 PKP4-210ENST00000480171 2772 ntTSL 28.96□□□□□ -0.974e-6■■■□□ 16.3
DDX55Q8NHQ9 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.058e-64■■■□□ 16.3
DDX55Q8NHQ9 DHCR24-203ENST00000535035 4153 ntTSL 1 (best) BASIC11.13□□□□□ -0.638e-64■■■□□ 16.3
DDX55Q8NHQ9 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC26.88■■□□□ 1.898e-18■■■□□ 16.3
DDX55Q8NHQ9 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.431e-7■■■□□ 16.2
DDX55Q8NHQ9 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.21e-6■■■□□ 16.2
DDX55Q8NHQ9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.173e-16■■■□□ 16.2
DDX55Q8NHQ9 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.55■■□□□ 1.043e-16■■■□□ 16.2
DDX55Q8NHQ9 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.49■□□□□ 0.873e-16■■■□□ 16.2
DDX55Q8NHQ9 RBM14-RBM4-202ENST00000421355 2034 ntTSL 220.4■□□□□ 0.863e-16■■■□□ 16.2
DDX55Q8NHQ9 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.193e-16■■■□□ 16.2
DDX55Q8NHQ9 RBM14-RBM4-204ENST00000511114 523 ntTSL 415.01□□□□□ -0.013e-16■■■□□ 16.2
DDX55Q8NHQ9 SRRM2-216ENST00000573583 543 ntTSL 410.79□□□□□ -0.685e-20■■■□□ 16.2
DDX55Q8NHQ9 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.87■■■□□ 2.697e-8■■■□□ 16.2
DDX55Q8NHQ9 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.17e-8■■■□□ 16.2
DDX55Q8NHQ9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.69■■□□□ 1.387e-8■■■□□ 16.2
DDX55Q8NHQ9 EIF4G1-233ENST00000475721 1271 ntTSL 224.56■■□□□ 1.526e-9■■■□□ 16.2
DDX55Q8NHQ9 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.5■□□□□ 0.394e-8■■■□□ 16.2
DDX55Q8NHQ9 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.344e-8■■■□□ 16.2
DDX55Q8NHQ9 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.75■□□□□ 0.274e-8■■■□□ 16.2
DDX55Q8NHQ9 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.72■□□□□ 0.274e-8■■■□□ 16.2
DDX55Q8NHQ9 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.61■□□□□ 0.254e-8■■■□□ 16.2
DDX55Q8NHQ9 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.45■□□□□ 0.224e-8■■■□□ 16.2
DDX55Q8NHQ9 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.144e-8■■■□□ 16.2
DDX55Q8NHQ9 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC15.87■□□□□ 0.136e-9■■■□□ 16.2
DDX55Q8NHQ9 EIF4G1-222ENST00000442406 5129 ntTSL 1 (best)15.27■□□□□ 0.034e-8■■■□□ 16.2
DDX55Q8NHQ9 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC14.73□□□□□ -0.056e-9■■■□□ 16.2
DDX55Q8NHQ9 MTA1-220ENST00000552286 1943 ntTSL 222.23■■□□□ 1.153e-9■■■□□ 16.2
DDX55Q8NHQ9 MTA1-206ENST00000434050 2050 ntTSL 1 (best)20.99■□□□□ 0.953e-9■■■□□ 16.2
DDX55Q8NHQ9 CTAGE5-202ENST00000280083 3860 ntTSL 1 (best) BASIC12.87□□□□□ -0.352e-16■■■□□ 16.2
DDX55Q8NHQ9 CTAGE5-206ENST00000396158 3695 ntTSL 1 (best) BASIC12.16□□□□□ -0.462e-16■■■□□ 16.2
DDX55Q8NHQ9 CTAGE5-203ENST00000341502 4091 ntTSL 1 (best) BASIC11□□□□□ -0.652e-16■■■□□ 16.2
DDX55Q8NHQ9 CTAGE5-205ENST00000348007 2762 ntTSL 1 (best) BASIC9.71□□□□□ -0.852e-16■■■□□ 16.2
DDX55Q8NHQ9 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.67□□□□□ -1.342e-16■■■□□ 16.2
DDX55Q8NHQ9 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC6.52□□□□□ -1.372e-16■■■□□ 16.2
DDX55Q8NHQ9 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.36□□□□□ -1.552e-16■■■□□ 16.2
DDX55Q8NHQ9 CTAGE5-209ENST00000553383 1010 ntTSL 24.65□□□□□ -1.672e-16■■■□□ 16.2
DDX55Q8NHQ9 ANPEP-201ENST00000300060 3678 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.472e-8■■■□□ 16.2
Retrieved 100 of 15,504 protein–RNA pairs in 74.2 ms