Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SMC1BQ8NDV3 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC25.59■■□□□ 1.69
SMC1BQ8NDV3 AL162412.1-201ENST00000567129 965 ntBASIC25.59■■□□□ 1.69
SMC1BQ8NDV3 AC060766.5-201ENST00000590539 871 ntBASIC25.59■■□□□ 1.69
SMC1BQ8NDV3 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
SMC1BQ8NDV3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SMC1BQ8NDV3 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SMC1BQ8NDV3 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
SMC1BQ8NDV3 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 AC135731.1-201ENST00000569415 2548 ntBASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 LSM12P1-201ENST00000411836 588 ntBASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 AC087499.1-201ENST00000418141 1075 ntBASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 AC097493.4-201ENST00000641197 219 ntBASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
SMC1BQ8NDV3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC25.58■■□□□ 1.68
SMC1BQ8NDV3 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
SMC1BQ8NDV3 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SMC1BQ8NDV3 EI24-213ENST00000618552 1747 ntTSL 5 BASIC25.57■■□□□ 1.68
SMC1BQ8NDV3 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SMC1BQ8NDV3 AC012618.2-201ENST00000428058 849 ntBASIC25.57■■□□□ 1.68
SMC1BQ8NDV3 WDR88-203ENST00000592765 651 ntTSL 5 BASIC25.57■■□□□ 1.68
SMC1BQ8NDV3 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SMC1BQ8NDV3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC25.57■■□□□ 1.68
SMC1BQ8NDV3 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC25.57■■□□□ 1.68
SMC1BQ8NDV3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.57■■□□□ 1.68
SMC1BQ8NDV3 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
SMC1BQ8NDV3 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SMC1BQ8NDV3 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
SMC1BQ8NDV3 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SMC1BQ8NDV3 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC25.56■■□□□ 1.68
SMC1BQ8NDV3 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC25.56■■□□□ 1.68
SMC1BQ8NDV3 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC25.56■■□□□ 1.68
SMC1BQ8NDV3 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 DUSP8P5-201ENST00000422884 1815 ntBASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC25.55■■□□□ 1.68
SMC1BQ8NDV3 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 TMPOP1-202ENST00000424642 1267 ntBASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 TSPY7P-201ENST00000431358 1114 ntBASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 AC012306.2-201ENST00000609350 630 ntBASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 HLA-B-256ENST00000639848 1089 ntBASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
SMC1BQ8NDV3 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 AC233702.5-201ENST00000584107 538 ntBASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 AL591742.1-201ENST00000604433 565 ntBASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
SMC1BQ8NDV3 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
SMC1BQ8NDV3 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SMC1BQ8NDV3 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
SMC1BQ8NDV3 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC25.52■■□□□ 1.68
SMC1BQ8NDV3 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC25.52■■□□□ 1.68
SMC1BQ8NDV3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC25.51■■□□□ 1.67
SMC1BQ8NDV3 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC25.51■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms