Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC28AQ8IWP9 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC28AQ8IWP9 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC28AQ8IWP9 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC28AQ8IWP9 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.77■□□□□ 0.43
CCDC28AQ8IWP9 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.77■□□□□ 0.43
CCDC28AQ8IWP9 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC28AQ8IWP9 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC28AQ8IWP9 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 AC244015.2-201ENST00000616358 1861 ntBASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC28AQ8IWP9 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC28AQ8IWP9 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CCDC28AQ8IWP9 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28AQ8IWP9 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28AQ8IWP9 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28AQ8IWP9 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28AQ8IWP9 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28AQ8IWP9 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28AQ8IWP9 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28AQ8IWP9 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28AQ8IWP9 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC28AQ8IWP9 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC28AQ8IWP9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms