Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
UBE3DQ7Z6J8 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
UBE3DQ7Z6J8 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
UBE3DQ7Z6J8 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
UBE3DQ7Z6J8 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UBE3DQ7Z6J8 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.29■□□□□ 0.84
UBE3DQ7Z6J8 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.29■□□□□ 0.84
UBE3DQ7Z6J8 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.28■□□□□ 0.84
UBE3DQ7Z6J8 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 AC027612.3-201ENST00000413684 1047 ntBASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
UBE3DQ7Z6J8 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
UBE3DQ7Z6J8 AC244015.2-201ENST00000616358 1861 ntBASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
UBE3DQ7Z6J8 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.25■□□□□ 0.83
UBE3DQ7Z6J8 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
UBE3DQ7Z6J8 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
UBE3DQ7Z6J8 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.25■□□□□ 0.83
UBE3DQ7Z6J8 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
UBE3DQ7Z6J8 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
UBE3DQ7Z6J8 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.25■□□□□ 0.83
UBE3DQ7Z6J8 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
UBE3DQ7Z6J8 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.25■□□□□ 0.83
UBE3DQ7Z6J8 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
UBE3DQ7Z6J8 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UBE3DQ7Z6J8 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
UBE3DQ7Z6J8 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UBE3DQ7Z6J8 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.24■□□□□ 0.83
UBE3DQ7Z6J8 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UBE3DQ7Z6J8 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.24■□□□□ 0.83
UBE3DQ7Z6J8 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
UBE3DQ7Z6J8 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
UBE3DQ7Z6J8 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.24■□□□□ 0.83
UBE3DQ7Z6J8 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UBE3DQ7Z6J8 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
UBE3DQ7Z6J8 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
UBE3DQ7Z6J8 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.23■□□□□ 0.83
UBE3DQ7Z6J8 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
UBE3DQ7Z6J8 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
UBE3DQ7Z6J8 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.23■□□□□ 0.83
UBE3DQ7Z6J8 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.23■□□□□ 0.83
UBE3DQ7Z6J8 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.23■□□□□ 0.83
UBE3DQ7Z6J8 AC104564.3-201ENST00000582367 638 ntBASIC20.23■□□□□ 0.83
UBE3DQ7Z6J8 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.23■□□□□ 0.83
UBE3DQ7Z6J8 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms