Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USF3Q68DE3 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.33■□□□□ 0.53
USF3Q68DE3 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF3Q68DE3 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF3Q68DE3 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF3Q68DE3 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF3Q68DE3 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF3Q68DE3 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF3Q68DE3 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.33■□□□□ 0.53
USF3Q68DE3 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.33■□□□□ 0.53
USF3Q68DE3 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.33■□□□□ 0.53
USF3Q68DE3 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF3Q68DE3 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.33■□□□□ 0.53
USF3Q68DE3 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USF3Q68DE3 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.33■□□□□ 0.53
USF3Q68DE3 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF3Q68DE3 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.33■□□□□ 0.53
USF3Q68DE3 AC066615.1-201ENST00000640911 628 ntBASIC18.33■□□□□ 0.53
USF3Q68DE3 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USF3Q68DE3 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.33■□□□□ 0.52
USF3Q68DE3 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
USF3Q68DE3 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
USF3Q68DE3 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
USF3Q68DE3 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
USF3Q68DE3 AC055733.4-201ENST00000638462 1354 ntBASIC18.33■□□□□ 0.52
USF3Q68DE3 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USF3Q68DE3 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USF3Q68DE3 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
USF3Q68DE3 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
USF3Q68DE3 UBE2DNL-204ENST00000602536 740 ntBASIC18.33■□□□□ 0.52
USF3Q68DE3 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.33■□□□□ 0.52
USF3Q68DE3 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USF3Q68DE3 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
USF3Q68DE3 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USF3Q68DE3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
USF3Q68DE3 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USF3Q68DE3 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USF3Q68DE3 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.32■□□□□ 0.52
USF3Q68DE3 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.32■□□□□ 0.52
USF3Q68DE3 TSPY20P-201ENST00000450910 630 ntBASIC18.32■□□□□ 0.52
USF3Q68DE3 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.32■□□□□ 0.52
USF3Q68DE3 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.32■□□□□ 0.52
USF3Q68DE3 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.32■□□□□ 0.52
USF3Q68DE3 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC18.32■□□□□ 0.52
USF3Q68DE3 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
USF3Q68DE3 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
USF3Q68DE3 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.31■□□□□ 0.52
USF3Q68DE3 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USF3Q68DE3 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF3Q68DE3 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.31■□□□□ 0.52
USF3Q68DE3 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF3Q68DE3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF3Q68DE3 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
USF3Q68DE3 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF3Q68DE3 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USF3Q68DE3 GUSBP6-202ENST00000438529 1198 ntBASIC18.31■□□□□ 0.52
USF3Q68DE3 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF3Q68DE3 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.31■□□□□ 0.52
USF3Q68DE3 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF3Q68DE3 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USF3Q68DE3 LINC00565-201ENST00000562710 2331 ntBASIC18.3■□□□□ 0.52
USF3Q68DE3 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USF3Q68DE3 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
USF3Q68DE3 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USF3Q68DE3 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USF3Q68DE3 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.3■□□□□ 0.52
USF3Q68DE3 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.3■□□□□ 0.52
USF3Q68DE3 MYCNOS-205ENST00000641950 531 ntBASIC18.3■□□□□ 0.52
USF3Q68DE3 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.3■□□□□ 0.52
USF3Q68DE3 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.3■□□□□ 0.52
USF3Q68DE3 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USF3Q68DE3 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
USF3Q68DE3 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
USF3Q68DE3 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USF3Q68DE3 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
USF3Q68DE3 AC083906.2-201ENST00000511578 360 ntBASIC18.3■□□□□ 0.52
USF3Q68DE3 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
USF3Q68DE3 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.3■□□□□ 0.52
USF3Q68DE3 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.3■□□□□ 0.52
USF3Q68DE3 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
USF3Q68DE3 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.3■□□□□ 0.52
USF3Q68DE3 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USF3Q68DE3 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USF3Q68DE3 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USF3Q68DE3 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.29■□□□□ 0.52
USF3Q68DE3 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.29■□□□□ 0.52
USF3Q68DE3 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
USF3Q68DE3 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.29■□□□□ 0.52
USF3Q68DE3 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USF3Q68DE3 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.29■□□□□ 0.52
USF3Q68DE3 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
USF3Q68DE3 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.29■□□□□ 0.52
USF3Q68DE3 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USF3Q68DE3 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.29■□□□□ 0.52
USF3Q68DE3 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
USF3Q68DE3 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USF3Q68DE3 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.29■□□□□ 0.52
USF3Q68DE3 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.29■□□□□ 0.52
USF3Q68DE3 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
USF3Q68DE3 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms