Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM3P62310 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM3P62310 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.19■□□□□ 0.66
LSM3P62310 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.19■□□□□ 0.66
LSM3P62310 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM3P62310 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LSM3P62310 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM3P62310 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
LSM3P62310 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.19■□□□□ 0.66
LSM3P62310 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.19■□□□□ 0.66
LSM3P62310 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
LSM3P62310 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM3P62310 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM3P62310 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM3P62310 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM3P62310 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM3P62310 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM3P62310 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
LSM3P62310 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.19■□□□□ 0.66
LSM3P62310 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM3P62310 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.19■□□□□ 0.66
LSM3P62310 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LSM3P62310 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM3P62310 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
LSM3P62310 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.18■□□□□ 0.66
LSM3P62310 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LSM3P62310 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM3P62310 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM3P62310 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.18■□□□□ 0.66
LSM3P62310 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM3P62310 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM3P62310 SPCS2P3-201ENST00000500401 656 ntBASIC19.18■□□□□ 0.66
LSM3P62310 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LSM3P62310 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC19.18■□□□□ 0.66
LSM3P62310 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.18■□□□□ 0.66
LSM3P62310 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
LSM3P62310 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.18■□□□□ 0.66
LSM3P62310 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM3P62310 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.18■□□□□ 0.66
LSM3P62310 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM3P62310 AL020996.1-203ENST00000536896 2307 ntBASIC19.18■□□□□ 0.66
LSM3P62310 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM3P62310 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.18■□□□□ 0.66
LSM3P62310 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM3P62310 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM3P62310 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.18■□□□□ 0.66
LSM3P62310 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM3P62310 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
LSM3P62310 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM3P62310 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.17■□□□□ 0.66
LSM3P62310 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
LSM3P62310 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM3P62310 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.17■□□□□ 0.66
LSM3P62310 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM3P62310 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LSM3P62310 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM3P62310 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM3P62310 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LSM3P62310 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
LSM3P62310 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
LSM3P62310 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM3P62310 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
LSM3P62310 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
LSM3P62310 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM3P62310 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.17■□□□□ 0.66
LSM3P62310 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM3P62310 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.17■□□□□ 0.66
LSM3P62310 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
LSM3P62310 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM3P62310 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.16■□□□□ 0.66
LSM3P62310 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM3P62310 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.16■□□□□ 0.66
LSM3P62310 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM3P62310 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
LSM3P62310 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM3P62310 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.16■□□□□ 0.66
LSM3P62310 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.16■□□□□ 0.66
LSM3P62310 LINC01529-204ENST00000636474 1715 ntBASIC19.16■□□□□ 0.66
LSM3P62310 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM3P62310 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
LSM3P62310 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LSM3P62310 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM3P62310 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM3P62310 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM3P62310 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LSM3P62310 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.16■□□□□ 0.66
LSM3P62310 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM3P62310 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM3P62310 AC026471.6-201ENST00000622954 1905 ntBASIC19.15■□□□□ 0.66
LSM3P62310 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
LSM3P62310 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.15■□□□□ 0.66
LSM3P62310 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.15■□□□□ 0.66
LSM3P62310 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
LSM3P62310 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.15■□□□□ 0.66
LSM3P62310 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.15■□□□□ 0.66
LSM3P62310 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LSM3P62310 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LSM3P62310 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.15■□□□□ 0.66
LSM3P62310 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LSM3P62310 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms