Protein–RNA interactions for Protein: P60228

EIF3E, Eukaryotic translation initiation factor 3 subunit E, humanhuman

Known RBP Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3EP60228 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC22■■□□□ 1.11
EIF3EP60228 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
EIF3EP60228 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
EIF3EP60228 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
EIF3EP60228 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22■■□□□ 1.11
EIF3EP60228 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.99■■□□□ 1.11
EIF3EP60228 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.99■■□□□ 1.11
EIF3EP60228 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
EIF3EP60228 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
EIF3EP60228 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
EIF3EP60228 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
EIF3EP60228 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
EIF3EP60228 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
EIF3EP60228 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
EIF3EP60228 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
EIF3EP60228 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
EIF3EP60228 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.99■■□□□ 1.11
EIF3EP60228 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.99■■□□□ 1.11
EIF3EP60228 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.99■■□□□ 1.11
EIF3EP60228 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.99■■□□□ 1.11
EIF3EP60228 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
EIF3EP60228 AC233992.3-201ENST00000607491 485 ntBASIC21.99■■□□□ 1.11
EIF3EP60228 AC135279.3-201ENST00000610945 1311 ntBASIC21.99■■□□□ 1.11
EIF3EP60228 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
EIF3EP60228 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.99■■□□□ 1.11
EIF3EP60228 AC008406.3-201ENST00000620001 1374 ntBASIC21.99■■□□□ 1.11
EIF3EP60228 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
EIF3EP60228 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.98■■□□□ 1.11
EIF3EP60228 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
EIF3EP60228 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
EIF3EP60228 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.98■■□□□ 1.11
EIF3EP60228 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.98■■□□□ 1.11
EIF3EP60228 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
EIF3EP60228 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.98■■□□□ 1.11
EIF3EP60228 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
EIF3EP60228 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
EIF3EP60228 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
EIF3EP60228 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
EIF3EP60228 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.97■■□□□ 1.11
EIF3EP60228 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
EIF3EP60228 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.97■■□□□ 1.11
EIF3EP60228 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.97■■□□□ 1.11
EIF3EP60228 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
EIF3EP60228 AC126544.1-201ENST00000580842 1059 ntBASIC21.97■■□□□ 1.11
EIF3EP60228 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
EIF3EP60228 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
EIF3EP60228 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
EIF3EP60228 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
EIF3EP60228 FEM1AP4-201ENST00000443167 1987 ntBASIC21.97■■□□□ 1.11
EIF3EP60228 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
EIF3EP60228 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
EIF3EP60228 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.97■■□□□ 1.11
EIF3EP60228 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
EIF3EP60228 AC003102.1-202ENST00000563394 1796 ntBASIC21.97■■□□□ 1.11
EIF3EP60228 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
EIF3EP60228 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
EIF3EP60228 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.96■■□□□ 1.11
EIF3EP60228 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.96■■□□□ 1.11
EIF3EP60228 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.96■■□□□ 1.11
EIF3EP60228 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
EIF3EP60228 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
EIF3EP60228 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.96■■□□□ 1.11
EIF3EP60228 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.96■■□□□ 1.11
EIF3EP60228 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
EIF3EP60228 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
EIF3EP60228 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.96■■□□□ 1.11
EIF3EP60228 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
EIF3EP60228 AC133561.4-201ENST00000566112 224 ntBASIC21.96■■□□□ 1.11
EIF3EP60228 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.96■■□□□ 1.11
EIF3EP60228 AF106564.1-201ENST00000607058 2553 ntBASIC21.96■■□□□ 1.11
EIF3EP60228 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
EIF3EP60228 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
EIF3EP60228 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
EIF3EP60228 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
EIF3EP60228 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
EIF3EP60228 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.95■■□□□ 1.1
EIF3EP60228 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EIF3EP60228 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
EIF3EP60228 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EIF3EP60228 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.95■■□□□ 1.1
EIF3EP60228 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
EIF3EP60228 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
EIF3EP60228 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
EIF3EP60228 SMUG1P1-201ENST00000590640 811 ntBASIC21.95■■□□□ 1.1
EIF3EP60228 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EIF3EP60228 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
EIF3EP60228 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EIF3EP60228 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
EIF3EP60228 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
EIF3EP60228 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
EIF3EP60228 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
EIF3EP60228 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
EIF3EP60228 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
EIF3EP60228 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
EIF3EP60228 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.94■■□□□ 1.1
EIF3EP60228 AC096631.2-201ENST00000436136 790 ntBASIC21.94■■□□□ 1.1
EIF3EP60228 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.94■■□□□ 1.1
EIF3EP60228 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.94■■□□□ 1.1
EIF3EP60228 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
EIF3EP60228 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms