Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.89■■□□□ 1.09
CDH4P55283 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CDH4P55283 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CDH4P55283 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CDH4P55283 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CDH4P55283 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.09
CDH4P55283 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.89■■□□□ 1.09
CDH4P55283 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CDH4P55283 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CDH4P55283 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH4P55283 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.88■■□□□ 1.09
CDH4P55283 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
CDH4P55283 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH4P55283 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.88■■□□□ 1.09
CDH4P55283 KRT19P1-201ENST00000405746 1186 ntBASIC21.88■■□□□ 1.09
CDH4P55283 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
CDH4P55283 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.88■■□□□ 1.09
CDH4P55283 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
CDH4P55283 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH4P55283 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.88■■□□□ 1.09
CDH4P55283 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CDH4P55283 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH4P55283 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH4P55283 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CDH4P55283 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CDH4P55283 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CDH4P55283 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH4P55283 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH4P55283 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH4P55283 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.87■■□□□ 1.09
CDH4P55283 AC022517.1-201ENST00000592429 346 ntBASIC21.87■■□□□ 1.09
CDH4P55283 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CDH4P55283 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH4P55283 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH4P55283 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
CDH4P55283 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CDH4P55283 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH4P55283 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.87■■□□□ 1.09
CDH4P55283 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.87■■□□□ 1.09
CDH4P55283 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.86■■□□□ 1.09
CDH4P55283 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CDH4P55283 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.86■■□□□ 1.09
CDH4P55283 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.86■■□□□ 1.09
CDH4P55283 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.86■■□□□ 1.09
CDH4P55283 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
CDH4P55283 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CDH4P55283 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CDH4P55283 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH4P55283 AC003102.1-202ENST00000563394 1796 ntBASIC21.85■■□□□ 1.09
CDH4P55283 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH4P55283 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.85■■□□□ 1.09
CDH4P55283 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.85■■□□□ 1.09
CDH4P55283 EEF1DP3-203ENST00000566025 782 ntBASIC21.85■■□□□ 1.09
CDH4P55283 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH4P55283 AC104187.1-201ENST00000607510 612 ntBASIC21.85■■□□□ 1.09
CDH4P55283 AC092666.2-201ENST00000613287 246 ntBASIC21.85■■□□□ 1.09
CDH4P55283 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
CDH4P55283 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH4P55283 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH4P55283 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH4P55283 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH4P55283 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CDH4P55283 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDH4P55283 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CDH4P55283 AC053503.5-201ENST00000601508 636 ntBASIC21.84■■□□□ 1.09
CDH4P55283 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDH4P55283 AC026471.6-201ENST00000622954 1905 ntBASIC21.84■■□□□ 1.09
CDH4P55283 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CDH4P55283 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDH4P55283 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDH4P55283 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDH4P55283 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDH4P55283 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDH4P55283 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
CDH4P55283 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.83■■□□□ 1.09
CDH4P55283 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.83■■□□□ 1.09
CDH4P55283 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.83■■□□□ 1.09
CDH4P55283 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDH4P55283 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CDH4P55283 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
CDH4P55283 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CDH4P55283 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.82■■□□□ 1.08
CDH4P55283 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDH4P55283 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDH4P55283 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDH4P55283 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CDH4P55283 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.82■■□□□ 1.08
CDH4P55283 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDH4P55283 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDH4P55283 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDH4P55283 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDH4P55283 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
CDH4P55283 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
CDH4P55283 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH4P55283 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH4P55283 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH4P55283 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CDH4P55283 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.81■■□□□ 1.08
CDH4P55283 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH4P55283 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms