Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 ARO4YBR249C 1113 nt3.76□□□□□ -1.81
UPF3P48412 VIP1YLR410W 3441 nt3.76□□□□□ -1.81
UPF3P48412 YBR225WYBR225W 2703 nt3.76□□□□□ -1.81
UPF3P48412 SLY41YOR307C 1362 nt3.76□□□□□ -1.81
UPF3P48412 RPN6YDL097C 1305 nt3.75□□□□□ -1.81
UPF3P48412 BIK1YCL029C 1323 nt3.75□□□□□ -1.81
UPF3P48412 YDL157CYDL157C 357 nt3.75□□□□□ -1.81
UPF3P48412 AHA1YDR214W 1053 nt3.75□□□□□ -1.81
UPF3P48412 RPL22BYFL034C-A 369 nt3.75□□□□□ -1.81
UPF3P48412 YGL108CYGL108C 423 nt3.75□□□□□ -1.81
UPF3P48412 YOL106WYOL106W 354 nt3.75□□□□□ -1.81
UPF3P48412 HAT1YPL001W 1125 nt3.75□□□□□ -1.81
UPF3P48412 SNF8YPL002C 702 nt3.75□□□□□ -1.81
UPF3P48412 GEP7YGL057C 864 nt3.74□□□□□ -1.81
UPF3P48412 YGL242CYGL242C 546 nt3.74□□□□□ -1.81
UPF3P48412 ERG25YGR060W 930 nt3.74□□□□□ -1.81
UPF3P48412 YHR182C-AYHR182C-A 474 nt3.74□□□□□ -1.81
UPF3P48412 RFA3YJL173C 369 nt3.74□□□□□ -1.81
UPF3P48412 YLR416CYLR416C 399 nt3.74□□□□□ -1.81
UPF3P48412 ABP140YOR239W 1887 nt3.74□□□□□ -1.81
UPF3P48412 FAR8YMR029C 1572 nt3.73□□□□□ -1.81
UPF3P48412 SWH1YAR042W 3567 nt3.73□□□□□ -1.81
UPF3P48412 PET100YDR079W 336 nt3.73□□□□□ -1.81
UPF3P48412 GRX2YDR513W 432 nt3.73□□□□□ -1.81
UPF3P48412 OTU1YFL044C 906 nt3.73□□□□□ -1.81
UPF3P48412 RPB3YIL021W 957 nt3.73□□□□□ -1.81
UPF3P48412 SEC28YIL076W 891 nt3.73□□□□□ -1.81
UPF3P48412 YLR154W-BYLR154W-B 165 nt3.73□□□□□ -1.81
UPF3P48412 YLR169WYLR169W 354 nt3.73□□□□□ -1.81
UPF3P48412 YLR366WYLR366W 306 nt3.73□□□□□ -1.81
UPF3P48412 PEX11YOL147C 711 nt3.73□□□□□ -1.81
UPF3P48412 YOR062CYOR062C 807 nt3.73□□□□□ -1.81
UPF3P48412 HHF1YBR009C 312 nt3.73□□□□□ -1.81
UPF3P48412 YPL088WYPL088W 1029 nt3.73□□□□□ -1.81
UPF3P48412 POL30YBR088C 777 nt3.73□□□□□ -1.81
UPF3P48412 MRPS9YBR146W 837 nt3.73□□□□□ -1.81
UPF3P48412 VPS17YOR132W 1656 nt3.73□□□□□ -1.81
UPF3P48412 PPZ1YML016C 2079 nt3.73□□□□□ -1.81
UPF3P48412 ETP1YHL010C 1758 nt3.73□□□□□ -1.81
UPF3P48412 AVT7YIL088C 1473 nt3.73□□□□□ -1.81
UPF3P48412 REB1YBR049C 2433 nt3.72□□□□□ -1.81
UPF3P48412 RAD4YER162C 2265 nt3.72□□□□□ -1.81
UPF3P48412 THR4YCR053W 1545 nt3.72□□□□□ -1.81
UPF3P48412 HTA1YDR225W 399 nt3.72□□□□□ -1.81
UPF3P48412 YDR491CYDR491C 492 nt3.72□□□□□ -1.81
UPF3P48412 YFR057WYFR057W 456 nt3.72□□□□□ -1.81
UPF3P48412 YGL230CYGL230C 444 nt3.72□□□□□ -1.81
UPF3P48412 LSM1YJL124C 519 nt3.72□□□□□ -1.81
UPF3P48412 YJR096WYJR096W 849 nt3.72□□□□□ -1.81
UPF3P48412 YAL066WYAL066W 309 nt3.72□□□□□ -1.81
UPF3P48412 RNH203YLR154C 333 nt3.72□□□□□ -1.81
UPF3P48412 HSE1YHL002W 1359 nt3.72□□□□□ -1.81
UPF3P48412 VPS9YML097C 1356 nt3.72□□□□□ -1.81
UPF3P48412 ROD1YOR018W 2514 nt3.72□□□□□ -1.81
UPF3P48412 EXO70YJL085W 1872 nt3.71□□□□□ -1.82
UPF3P48412 IRC3YDR332W 2070 nt3.71□□□□□ -1.82
UPF3P48412 IRC22YEL001C 678 nt3.71□□□□□ -1.82
UPF3P48412 YKR070WYKR070W 1059 nt3.71□□□□□ -1.82
UPF3P48412 MRPL20YKR085C 588 nt3.71□□□□□ -1.82
UPF3P48412 YLR339CYLR339C 552 nt3.71□□□□□ -1.82
UPF3P48412 PDR12YPL058C 4536 nt3.71□□□□□ -1.82
UPF3P48412 SUC2YIL162W 1599 nt3.71□□□□□ -1.82
UPF3P48412 COM2YER130C 1332 nt3.7□□□□□ -1.82
UPF3P48412 SIZ1YDR409W 2715 nt3.7□□□□□ -1.82
UPF3P48412 YCR100CYCR100C 951 nt3.7□□□□□ -1.82
UPF3P48412 snR68snR68 136 nt3.7□□□□□ -1.82
UPF3P48412 YFR010W-AYFR010W-A 189 nt3.7□□□□□ -1.82
UPF3P48412 GEP4YHR100C 558 nt3.7□□□□□ -1.82
UPF3P48412 CDC12YHR107C 1224 nt3.7□□□□□ -1.82
UPF3P48412 SVP26YHR181W 687 nt3.7□□□□□ -1.82
UPF3P48412 YJR112W-AYJR112W-A 330 nt3.7□□□□□ -1.82
UPF3P48412 YLR400WYLR400W 474 nt3.7□□□□□ -1.82
UPF3P48412 YBL028CYBL028C 321 nt3.7□□□□□ -1.82
UPF3P48412 YOR203WYOR203W 354 nt3.7□□□□□ -1.82
UPF3P48412 RPA43YOR340C 981 nt3.7□□□□□ -1.82
UPF3P48412 CUP9YPL177C 921 nt3.7□□□□□ -1.82
UPF3P48412 CHK1YBR274W 1584 nt3.7□□□□□ -1.82
UPF3P48412 STU1YBL034C 4542 nt3.7□□□□□ -1.82
UPF3P48412 YDR149CYDR149C 708 nt3.69□□□□□ -1.82
UPF3P48412 SRB7YDR308C 423 nt3.69□□□□□ -1.82
UPF3P48412 SMT3YDR510W 306 nt3.69□□□□□ -1.82
UPF3P48412 SCM4YGR049W 564 nt3.69□□□□□ -1.82
UPF3P48412 SPC2YML055W 537 nt3.69□□□□□ -1.82
UPF3P48412 YNR062CYNR062C 984 nt3.69□□□□□ -1.82
UPF3P48412 DGA1YOR245C 1257 nt3.69□□□□□ -1.82
UPF3P48412 UBP5YER144C 2418 nt3.69□□□□□ -1.82
UPF3P48412 AI4Q0065 1671 nt3.68□□□□□ -1.82
UPF3P48412 FAT1YBR041W 2010 nt3.68□□□□□ -1.82
UPF3P48412 DIT2YDR402C 1470 nt3.68□□□□□ -1.82
UPF3P48412 ZDS1YMR273C 2748 nt3.68□□□□□ -1.82
UPF3P48412 USA1YML029W 2517 nt3.68□□□□□ -1.82
UPF3P48412 YGR039WYGR039W 312 nt3.68□□□□□ -1.82
UPF3P48412 FOL2YGR267C 732 nt3.68□□□□□ -1.82
UPF3P48412 FUR1YHR128W 651 nt3.68□□□□□ -1.82
UPF3P48412 NNF1YJR112W 606 nt3.68□□□□□ -1.82
UPF3P48412 YKL131WYKL131W 522 nt3.68□□□□□ -1.82
UPF3P48412 MRPL17YNL252C 846 nt3.68□□□□□ -1.82
UPF3P48412 RPB8YOR224C 441 nt3.68□□□□□ -1.82
UPF3P48412 SFG1YOR315W 1041 nt3.68□□□□□ -1.82
UPF3P48412 YPR077CYPR077C 372 nt3.68□□□□□ -1.82
Retrieved 100 of 7,029 protein–RNA pairs in 17.6 ms