Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MT-ND4P03905 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
MT-ND4P03905 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MT-ND4P03905 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
MT-ND4P03905 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MT-ND4P03905 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
MT-ND4P03905 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.49■□□□□ 0.55
MT-ND4P03905 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MT-ND4P03905 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MT-ND4P03905 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MT-ND4P03905 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MT-ND4P03905 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MT-ND4P03905 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
MT-ND4P03905 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MT-ND4P03905 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
MT-ND4P03905 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MT-ND4P03905 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MT-ND4P03905 DUX4L4-201ENST00000566884 1269 ntBASIC18.48■□□□□ 0.55
MT-ND4P03905 AL451085.2-201ENST00000605085 799 ntBASIC18.48■□□□□ 0.55
MT-ND4P03905 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
MT-ND4P03905 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MT-ND4P03905 AC009102.2-201ENST00000606772 1639 ntBASIC18.48■□□□□ 0.55
MT-ND4P03905 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.48■□□□□ 0.55
MT-ND4P03905 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MT-ND4P03905 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.47■□□□□ 0.55
MT-ND4P03905 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MT-ND4P03905 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
MT-ND4P03905 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MT-ND4P03905 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MT-ND4P03905 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MT-ND4P03905 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
MT-ND4P03905 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MT-ND4P03905 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.46■□□□□ 0.55
MT-ND4P03905 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.46■□□□□ 0.55
MT-ND4P03905 TFPT-201ENST00000391757 774 ntTSL 5 BASIC18.46■□□□□ 0.55
MT-ND4P03905 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MT-ND4P03905 TSPY9P-201ENST00000440215 945 ntBASIC18.46■□□□□ 0.55
MT-ND4P03905 TSPY11P-201ENST00000442607 1045 ntBASIC18.46■□□□□ 0.55
MT-ND4P03905 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
MT-ND4P03905 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MT-ND4P03905 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.46■□□□□ 0.55
MT-ND4P03905 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MT-ND4P03905 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
MT-ND4P03905 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MT-ND4P03905 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MT-ND4P03905 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MT-ND4P03905 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MT-ND4P03905 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
MT-ND4P03905 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MT-ND4P03905 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.45■□□□□ 0.54
MT-ND4P03905 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MT-ND4P03905 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MT-ND4P03905 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
MT-ND4P03905 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.45■□□□□ 0.54
MT-ND4P03905 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
MT-ND4P03905 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.45■□□□□ 0.54
MT-ND4P03905 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.45■□□□□ 0.54
MT-ND4P03905 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MT-ND4P03905 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
MT-ND4P03905 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MT-ND4P03905 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
MT-ND4P03905 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MT-ND4P03905 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MT-ND4P03905 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MT-ND4P03905 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MT-ND4P03905 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
MT-ND4P03905 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MT-ND4P03905 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.44■□□□□ 0.54
MT-ND4P03905 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.44■□□□□ 0.54
MT-ND4P03905 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MT-ND4P03905 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MT-ND4P03905 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MT-ND4P03905 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.44■□□□□ 0.54
MT-ND4P03905 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
MT-ND4P03905 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MT-ND4P03905 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.44■□□□□ 0.54
MT-ND4P03905 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
MT-ND4P03905 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
MT-ND4P03905 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
MT-ND4P03905 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MT-ND4P03905 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.44■□□□□ 0.54
MT-ND4P03905 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MT-ND4P03905 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms