Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDLRP01130 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.48■□□□□ 0.87
LDLRP01130 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
LDLRP01130 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDLRP01130 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LDLRP01130 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.48■□□□□ 0.87
LDLRP01130 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDLRP01130 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.47■□□□□ 0.87
LDLRP01130 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDLRP01130 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.47■□□□□ 0.87
LDLRP01130 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.47■□□□□ 0.87
LDLRP01130 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDLRP01130 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
LDLRP01130 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.47■□□□□ 0.87
LDLRP01130 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LDLRP01130 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.47■□□□□ 0.87
LDLRP01130 AC099791.2-201ENST00000605725 427 ntBASIC20.47■□□□□ 0.87
LDLRP01130 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LDLRP01130 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
LDLRP01130 AC244015.2-201ENST00000616358 1861 ntBASIC20.47■□□□□ 0.87
LDLRP01130 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.47■□□□□ 0.87
LDLRP01130 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDLRP01130 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDLRP01130 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
LDLRP01130 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LDLRP01130 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
LDLRP01130 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.46■□□□□ 0.87
LDLRP01130 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
LDLRP01130 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.46■□□□□ 0.87
LDLRP01130 KRT18P5-201ENST00000436075 1291 ntBASIC20.46■□□□□ 0.87
LDLRP01130 SLC47A1P1-202ENST00000449666 945 ntBASIC20.46■□□□□ 0.87
LDLRP01130 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LDLRP01130 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDLRP01130 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LDLRP01130 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.46■□□□□ 0.87
LDLRP01130 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
LDLRP01130 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDLRP01130 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LDLRP01130 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LDLRP01130 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.45■□□□□ 0.86
LDLRP01130 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LDLRP01130 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
LDLRP01130 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LDLRP01130 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.45■□□□□ 0.86
LDLRP01130 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.45■□□□□ 0.86
LDLRP01130 AC092437.1-201ENST00000624794 1048 ntBASIC20.45■□□□□ 0.86
LDLRP01130 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LDLRP01130 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.45■□□□□ 0.86
LDLRP01130 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
LDLRP01130 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.44■□□□□ 0.86
LDLRP01130 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDLRP01130 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDLRP01130 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDLRP01130 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LDLRP01130 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.44■□□□□ 0.86
LDLRP01130 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDLRP01130 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.44■□□□□ 0.86
LDLRP01130 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LDLRP01130 ID1-201ENST00000376105 1233 ntBASIC20.44■□□□□ 0.86
LDLRP01130 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.44■□□□□ 0.86
LDLRP01130 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LDLRP01130 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.44■□□□□ 0.86
LDLRP01130 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.44■□□□□ 0.86
LDLRP01130 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
LDLRP01130 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDLRP01130 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LDLRP01130 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
LDLRP01130 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDLRP01130 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDLRP01130 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.43■□□□□ 0.86
LDLRP01130 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
LDLRP01130 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.43■□□□□ 0.86
LDLRP01130 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDLRP01130 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LDLRP01130 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDLRP01130 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDLRP01130 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.43■□□□□ 0.86
LDLRP01130 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
LDLRP01130 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDLRP01130 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.43■□□□□ 0.86
LDLRP01130 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDLRP01130 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDLRP01130 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDLRP01130 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
LDLRP01130 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LDLRP01130 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.42■□□□□ 0.86
LDLRP01130 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.42■□□□□ 0.86
LDLRP01130 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.42■□□□□ 0.86
LDLRP01130 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.42■□□□□ 0.86
LDLRP01130 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LDLRP01130 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDLRP01130 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms