Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CACNA1FO60840 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CACNA1FO60840 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
CACNA1FO60840 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CACNA1FO60840 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
CACNA1FO60840 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC27.11■■□□□ 1.93
CACNA1FO60840 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC27.11■■□□□ 1.93
CACNA1FO60840 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC27.11■■□□□ 1.93
CACNA1FO60840 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CACNA1FO60840 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CACNA1FO60840 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC27.11■■□□□ 1.93
CACNA1FO60840 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CACNA1FO60840 C11orf96-202ENST00000528572 1834 ntBASIC27.11■■□□□ 1.93
CACNA1FO60840 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CACNA1FO60840 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
CACNA1FO60840 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
CACNA1FO60840 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC27.1■■□□□ 1.93
CACNA1FO60840 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
CACNA1FO60840 GOLGA2P6-201ENST00000340929 2049 ntBASIC27.1■■□□□ 1.93
CACNA1FO60840 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
CACNA1FO60840 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
CACNA1FO60840 KRT18P11-201ENST00000435214 1283 ntBASIC27.09■■□□□ 1.93
CACNA1FO60840 NTF6G-201ENST00000591094 616 ntBASIC27.09■■□□□ 1.93
CACNA1FO60840 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
CACNA1FO60840 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
CACNA1FO60840 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC27.09■■□□□ 1.93
CACNA1FO60840 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CACNA1FO60840 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CACNA1FO60840 STX7-201ENST00000367937 1090 ntTSL 5 BASIC27.09■■□□□ 1.93
CACNA1FO60840 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
CACNA1FO60840 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC27.08■■□□□ 1.93
CACNA1FO60840 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC27.08■■□□□ 1.93
CACNA1FO60840 AC006015.1-201ENST00000429970 570 ntBASIC27.08■■□□□ 1.93
CACNA1FO60840 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC27.08■■□□□ 1.93
CACNA1FO60840 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC27.08■■□□□ 1.93
CACNA1FO60840 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC27.08■■□□□ 1.93
CACNA1FO60840 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
CACNA1FO60840 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC27.08■■□□□ 1.93
CACNA1FO60840 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.92
CACNA1FO60840 HSCB-202ENST00000398941 955 ntTSL 2 BASIC27.08■■□□□ 1.92
CACNA1FO60840 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC27.08■■□□□ 1.92
CACNA1FO60840 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
CACNA1FO60840 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC27.07■■□□□ 1.92
CACNA1FO60840 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
CACNA1FO60840 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
CACNA1FO60840 AC053503.5-201ENST00000601508 636 ntBASIC27.07■■□□□ 1.92
CACNA1FO60840 MYCNOS-205ENST00000641950 531 ntBASIC27.07■■□□□ 1.92
CACNA1FO60840 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CACNA1FO60840 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
CACNA1FO60840 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
CACNA1FO60840 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC27.07■■□□□ 1.92
CACNA1FO60840 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CACNA1FO60840 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC27.07■■□□□ 1.92
CACNA1FO60840 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 UQCRFS1P1-201ENST00000435169 820 ntBASIC27.06■■□□□ 1.92
CACNA1FO60840 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC27.06■■□□□ 1.92
CACNA1FO60840 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC27.06■■□□□ 1.92
CACNA1FO60840 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC27.06■■□□□ 1.92
CACNA1FO60840 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
CACNA1FO60840 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
CACNA1FO60840 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC27.06■■□□□ 1.92
CACNA1FO60840 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
CACNA1FO60840 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CACNA1FO60840 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CACNA1FO60840 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC27.05■■□□□ 1.92
CACNA1FO60840 GXYLT1P2-201ENST00000433312 1230 ntBASIC27.05■■□□□ 1.92
CACNA1FO60840 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
CACNA1FO60840 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC27.05■■□□□ 1.92
CACNA1FO60840 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
CACNA1FO60840 MFSD11-216ENST00000590393 1141 ntBASIC27.04■■□□□ 1.92
CACNA1FO60840 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CACNA1FO60840 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC27.04■■□□□ 1.92
CACNA1FO60840 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC27.04■■□□□ 1.92
CACNA1FO60840 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
CACNA1FO60840 LSR-203ENST00000360798 1963 ntTSL 2 BASIC27.04■■□□□ 1.92
CACNA1FO60840 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CACNA1FO60840 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
CACNA1FO60840 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC27.04■■□□□ 1.92
CACNA1FO60840 KRT16P2-201ENST00000414673 1423 ntBASIC27.04■■□□□ 1.92
CACNA1FO60840 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CACNA1FO60840 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC27.04■■□□□ 1.92
CACNA1FO60840 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC27.04■■□□□ 1.92
CACNA1FO60840 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC27.04■■□□□ 1.92
CACNA1FO60840 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
CACNA1FO60840 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
CACNA1FO60840 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CACNA1FO60840 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
CACNA1FO60840 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC27.03■■□□□ 1.92
CACNA1FO60840 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC27.03■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms