Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.44
MSH4O15457 AC003102.1-202ENST00000563394 1796 ntBASIC24.08■■□□□ 1.44
MSH4O15457 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
MSH4O15457 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH4O15457 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH4O15457 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.07■■□□□ 1.44
MSH4O15457 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
MSH4O15457 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH4O15457 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
MSH4O15457 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC24.07■■□□□ 1.44
MSH4O15457 GXYLT1P2-201ENST00000433312 1230 ntBASIC24.07■■□□□ 1.44
MSH4O15457 GLI3-203ENST00000437480 451 ntTSL 2 BASIC24.07■■□□□ 1.44
MSH4O15457 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC24.07■■□□□ 1.44
MSH4O15457 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
MSH4O15457 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH4O15457 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
MSH4O15457 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC24.07■■□□□ 1.44
MSH4O15457 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH4O15457 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH4O15457 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH4O15457 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH4O15457 EP400NL-214ENST00000641289 2402 ntBASIC24.06■■□□□ 1.44
MSH4O15457 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
MSH4O15457 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
MSH4O15457 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC24.06■■□□□ 1.44
MSH4O15457 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC24.06■■□□□ 1.44
MSH4O15457 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
MSH4O15457 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
MSH4O15457 AC104187.1-201ENST00000607510 612 ntBASIC24.06■■□□□ 1.44
MSH4O15457 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC24.06■■□□□ 1.44
MSH4O15457 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
MSH4O15457 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC24.05■■□□□ 1.44
MSH4O15457 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
MSH4O15457 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
MSH4O15457 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH4O15457 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH4O15457 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH4O15457 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC24.05■■□□□ 1.44
MSH4O15457 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC24.05■■□□□ 1.44
MSH4O15457 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24.05■■□□□ 1.44
MSH4O15457 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.05■■□□□ 1.44
MSH4O15457 IKBKGP1-201ENST00000612193 1073 ntBASIC24.05■■□□□ 1.44
MSH4O15457 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH4O15457 AC010542.4-201ENST00000563151 1910 ntBASIC24.05■■□□□ 1.44
MSH4O15457 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH4O15457 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH4O15457 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
MSH4O15457 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
MSH4O15457 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH4O15457 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
MSH4O15457 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH4O15457 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
MSH4O15457 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC24.04■■□□□ 1.44
MSH4O15457 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
MSH4O15457 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC24.04■■□□□ 1.44
MSH4O15457 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC24.04■■□□□ 1.44
MSH4O15457 EEF1DP3-203ENST00000566025 782 ntBASIC24.04■■□□□ 1.44
MSH4O15457 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC24.04■■□□□ 1.44
MSH4O15457 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
MSH4O15457 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
MSH4O15457 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
MSH4O15457 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
MSH4O15457 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC24.03■■□□□ 1.44
MSH4O15457 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC24.03■■□□□ 1.44
MSH4O15457 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
MSH4O15457 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
MSH4O15457 ME3-201ENST00000323418 1068 ntTSL 5 BASIC24.03■■□□□ 1.44
MSH4O15457 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC24.03■■□□□ 1.44
MSH4O15457 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
MSH4O15457 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.03■■□□□ 1.44
MSH4O15457 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
MSH4O15457 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.03■■□□□ 1.44
MSH4O15457 AC092437.1-201ENST00000624794 1048 ntBASIC24.03■■□□□ 1.44
MSH4O15457 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
MSH4O15457 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
MSH4O15457 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
MSH4O15457 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
MSH4O15457 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH4O15457 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
MSH4O15457 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
MSH4O15457 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH4O15457 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH4O15457 KRT19P1-201ENST00000405746 1186 ntBASIC24.02■■□□□ 1.44
MSH4O15457 SERP1-208ENST00000491660 830 ntTSL 2 BASIC24.02■■□□□ 1.44
MSH4O15457 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC24.02■■□□□ 1.44
MSH4O15457 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
MSH4O15457 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.01■■□□□ 1.43
MSH4O15457 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC24.01■■□□□ 1.43
MSH4O15457 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC24.01■■□□□ 1.43
MSH4O15457 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
MSH4O15457 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
MSH4O15457 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC24.01■■□□□ 1.43
MSH4O15457 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC24.01■■□□□ 1.43
MSH4O15457 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
MSH4O15457 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC24■■□□□ 1.43
MSH4O15457 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC24■■□□□ 1.43
MSH4O15457 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
MSH4O15457 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
MSH4O15457 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC24■■□□□ 1.43
MSH4O15457 C11orf96-202ENST00000528572 1834 ntBASIC24■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms