Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC092171.4-201ENST00000609130 632 ntBASIC18.08■□□□□ 0.48
SDCBPO00560 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SDCBPO00560 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
SDCBPO00560 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
SDCBPO00560 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SDCBPO00560 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SDCBPO00560 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
SDCBPO00560 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.07■□□□□ 0.48
SDCBPO00560 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.07■□□□□ 0.48
SDCBPO00560 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
SDCBPO00560 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.07■□□□□ 0.48
SDCBPO00560 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.07■□□□□ 0.48
SDCBPO00560 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.07■□□□□ 0.48
SDCBPO00560 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
SDCBPO00560 AL512631.2-201ENST00000604634 923 ntBASIC18.07■□□□□ 0.48
SDCBPO00560 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.07■□□□□ 0.48
SDCBPO00560 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.07■□□□□ 0.48
SDCBPO00560 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.07■□□□□ 0.48
SDCBPO00560 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.07■□□□□ 0.48
SDCBPO00560 AC133637.1-201ENST00000624115 1537 ntBASIC18.07■□□□□ 0.48
SDCBPO00560 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SDCBPO00560 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
SDCBPO00560 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SDCBPO00560 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDCBPO00560 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SDCBPO00560 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDCBPO00560 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDCBPO00560 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDCBPO00560 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
SDCBPO00560 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDCBPO00560 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.06■□□□□ 0.48
SDCBPO00560 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDCBPO00560 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
SDCBPO00560 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDCBPO00560 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.06■□□□□ 0.48
SDCBPO00560 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDCBPO00560 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.06■□□□□ 0.48
SDCBPO00560 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDCBPO00560 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.06■□□□□ 0.48
SDCBPO00560 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SDCBPO00560 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
SDCBPO00560 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SDCBPO00560 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.05■□□□□ 0.48
SDCBPO00560 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
SDCBPO00560 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDCBPO00560 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDCBPO00560 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.05■□□□□ 0.48
SDCBPO00560 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDCBPO00560 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.05■□□□□ 0.48
SDCBPO00560 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SDCBPO00560 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SDCBPO00560 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
SDCBPO00560 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.05■□□□□ 0.48
SDCBPO00560 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.05■□□□□ 0.48
SDCBPO00560 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.05■□□□□ 0.48
SDCBPO00560 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC18.05■□□□□ 0.48
SDCBPO00560 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDCBPO00560 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDCBPO00560 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
SDCBPO00560 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SDCBPO00560 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDCBPO00560 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDCBPO00560 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SDCBPO00560 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.04■□□□□ 0.48
SDCBPO00560 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 AC026471.6-201ENST00000622954 1905 ntBASIC18.04■□□□□ 0.48
SDCBPO00560 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.04■□□□□ 0.48
SDCBPO00560 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.04■□□□□ 0.48
SDCBPO00560 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.04■□□□□ 0.48
SDCBPO00560 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SDCBPO00560 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDCBPO00560 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
SDCBPO00560 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC18.04■□□□□ 0.48
SDCBPO00560 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms