Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGN4O00479 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
HMGN4O00479 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.86■□□□□ 0.77
HMGN4O00479 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.86■□□□□ 0.77
HMGN4O00479 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HMGN4O00479 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.86■□□□□ 0.77
HMGN4O00479 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.86■□□□□ 0.77
HMGN4O00479 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.86■□□□□ 0.77
HMGN4O00479 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.86■□□□□ 0.77
HMGN4O00479 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGN4O00479 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGN4O00479 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HMGN4O00479 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HMGN4O00479 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.86■□□□□ 0.77
HMGN4O00479 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
HMGN4O00479 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
HMGN4O00479 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGN4O00479 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGN4O00479 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGN4O00479 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGN4O00479 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGN4O00479 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGN4O00479 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGN4O00479 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGN4O00479 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGN4O00479 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGN4O00479 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.85■□□□□ 0.77
HMGN4O00479 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.85■□□□□ 0.77
HMGN4O00479 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGN4O00479 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.85■□□□□ 0.77
HMGN4O00479 AP006587.3-201ENST00000525742 1516 ntBASIC19.85■□□□□ 0.77
HMGN4O00479 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGN4O00479 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGN4O00479 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGN4O00479 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGN4O00479 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGN4O00479 AC008406.3-201ENST00000620001 1374 ntBASIC19.84■□□□□ 0.77
HMGN4O00479 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HMGN4O00479 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGN4O00479 AC126544.1-201ENST00000580842 1059 ntBASIC19.84■□□□□ 0.77
HMGN4O00479 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGN4O00479 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
HMGN4O00479 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGN4O00479 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGN4O00479 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGN4O00479 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGN4O00479 AL024507.2-201ENST00000606070 2574 ntBASIC19.84■□□□□ 0.77
HMGN4O00479 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGN4O00479 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGN4O00479 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.83■□□□□ 0.77
HMGN4O00479 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGN4O00479 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.83■□□□□ 0.77
HMGN4O00479 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.83■□□□□ 0.77
HMGN4O00479 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.83■□□□□ 0.77
HMGN4O00479 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.83■□□□□ 0.77
HMGN4O00479 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGN4O00479 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.83■□□□□ 0.76
HMGN4O00479 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HMGN4O00479 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGN4O00479 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGN4O00479 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGN4O00479 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGN4O00479 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGN4O00479 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGN4O00479 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGN4O00479 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
HMGN4O00479 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
HMGN4O00479 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGN4O00479 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGN4O00479 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGN4O00479 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGN4O00479 AC096631.2-201ENST00000436136 790 ntBASIC19.82■□□□□ 0.76
HMGN4O00479 IGHV3-19-201ENST00000521488 291 ntBASIC19.82■□□□□ 0.76
HMGN4O00479 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGN4O00479 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGN4O00479 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.82■□□□□ 0.76
HMGN4O00479 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGN4O00479 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGN4O00479 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGN4O00479 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.81■□□□□ 0.76
HMGN4O00479 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGN4O00479 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGN4O00479 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.81■□□□□ 0.76
HMGN4O00479 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGN4O00479 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
HMGN4O00479 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
HMGN4O00479 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGN4O00479 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.81■□□□□ 0.76
HMGN4O00479 AC008764.7-201ENST00000593779 1081 ntBASIC19.81■□□□□ 0.76
HMGN4O00479 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.81■□□□□ 0.76
HMGN4O00479 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGN4O00479 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGN4O00479 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGN4O00479 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.81■□□□□ 0.76
HMGN4O00479 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGN4O00479 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGN4O00479 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.8■□□□□ 0.76
HMGN4O00479 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HMGN4O00479 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.8■□□□□ 0.76
HMGN4O00479 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms