Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 FXN-202ENST00000396364 980 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 C11orf96-202ENST00000528572 1834 ntBASIC16.8■□□□□ 0.28
TRAV41A0A0B4J266 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 AC079140.4-201ENST00000507448 529 ntBASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 PLD4-205ENST00000553861 667 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 CCDC92B-201ENST00000575506 885 ntBASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 TERF1P2-201ENST00000583350 1212 ntBASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAV41A0A0B4J266 AC055733.4-201ENST00000638462 1354 ntBASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 EP400NL-214ENST00000641289 2402 ntBASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 KRT18P14-201ENST00000534205 1250 ntBASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 CPT2-209ENST00000636935 803 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAV41A0A0B4J266 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV41A0A0B4J266 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.28
TRAV41A0A0B4J266 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAV41A0A0B4J266 AC026271.2-201ENST00000428091 497 ntBASIC16.77■□□□□ 0.28
TRAV41A0A0B4J266 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC16.77■□□□□ 0.28
TRAV41A0A0B4J266 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC16.77■□□□□ 0.28
TRAV41A0A0B4J266 AC087623.3-201ENST00000607047 1098 ntBASIC16.77■□□□□ 0.28
TRAV41A0A0B4J266 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC16.77■□□□□ 0.28
TRAV41A0A0B4J266 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.77■□□□□ 0.27
TRAV41A0A0B4J266 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV41A0A0B4J266 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV41A0A0B4J266 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRAV41A0A0B4J266 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC16.77■□□□□ 0.27
TRAV41A0A0B4J266 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 AC034268.1-201ENST00000441047 882 ntBASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms