Protein–RNA interactions for Protein: Q9Y3B2

EXOSC1, Exosome complex component CSL4, humanhuman

Known RBP Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC1Q9Y3B2 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.13■□□□□ 0.65
EXOSC1Q9Y3B2 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
EXOSC1Q9Y3B2 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
EXOSC1Q9Y3B2 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.13■□□□□ 0.65
EXOSC1Q9Y3B2 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
EXOSC1Q9Y3B2 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
EXOSC1Q9Y3B2 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
EXOSC1Q9Y3B2 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.12■□□□□ 0.65
EXOSC1Q9Y3B2 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.12■□□□□ 0.65
EXOSC1Q9Y3B2 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
EXOSC1Q9Y3B2 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
EXOSC1Q9Y3B2 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
EXOSC1Q9Y3B2 AL499627.2-201ENST00000606283 725 ntBASIC19.12■□□□□ 0.65
EXOSC1Q9Y3B2 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
EXOSC1Q9Y3B2 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 AC103724.3-201ENST00000564481 992 ntBASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.11■□□□□ 0.65
EXOSC1Q9Y3B2 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 OR7E47P-201ENST00000546390 1422 ntBASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 AC021242.3-201ENST00000607598 1377 ntBASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 AC103834.1-201ENST00000520383 144 ntBASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 AL031602.1-201ENST00000633169 911 ntBASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.1■□□□□ 0.65
EXOSC1Q9Y3B2 LINC01006-201ENST00000333319 2292 ntBASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 YBX1P4-201ENST00000392794 808 ntBASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
EXOSC1Q9Y3B2 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
EXOSC1Q9Y3B2 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
EXOSC1Q9Y3B2 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.08■□□□□ 0.65
EXOSC1Q9Y3B2 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
EXOSC1Q9Y3B2 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
EXOSC1Q9Y3B2 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
EXOSC1Q9Y3B2 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.08■□□□□ 0.64
EXOSC1Q9Y3B2 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.08■□□□□ 0.64
EXOSC1Q9Y3B2 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
EXOSC1Q9Y3B2 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
EXOSC1Q9Y3B2 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 FEM1AP1-201ENST00000431297 1995 ntBASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
EXOSC1Q9Y3B2 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms