Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX1Q9NZR4 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VSX1Q9NZR4 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VSX1Q9NZR4 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.08■□□□□ 0.65
VSX1Q9NZR4 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VSX1Q9NZR4 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VSX1Q9NZR4 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.08■□□□□ 0.65
VSX1Q9NZR4 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VSX1Q9NZR4 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VSX1Q9NZR4 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
VSX1Q9NZR4 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VSX1Q9NZR4 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VSX1Q9NZR4 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 UNC93B3-201ENST00000308076 687 ntBASIC19.07■□□□□ 0.64
VSX1Q9NZR4 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 BX842568.3-201ENST00000418104 571 ntBASIC19.07■□□□□ 0.64
VSX1Q9NZR4 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 AC104564.3-201ENST00000582367 638 ntBASIC19.07■□□□□ 0.64
VSX1Q9NZR4 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VSX1Q9NZR4 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 MIR4767-201ENST00000582827 78 ntBASIC19.06■□□□□ 0.64
VSX1Q9NZR4 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VSX1Q9NZR4 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 AC131212.1-201ENST00000613771 668 ntBASIC19.05■□□□□ 0.64
VSX1Q9NZR4 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 AL137060.1-201ENST00000618151 2648 ntBASIC19.05■□□□□ 0.64
VSX1Q9NZR4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 Z98882.1-201ENST00000622160 2253 ntBASIC19.05■□□□□ 0.64
VSX1Q9NZR4 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.05■□□□□ 0.64
VSX1Q9NZR4 AP004607.7-201ENST00000527152 1677 ntBASIC19.05■□□□□ 0.64
VSX1Q9NZR4 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
VSX1Q9NZR4 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VSX1Q9NZR4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VSX1Q9NZR4 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VSX1Q9NZR4 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VSX1Q9NZR4 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.04■□□□□ 0.64
VSX1Q9NZR4 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.04■□□□□ 0.64
VSX1Q9NZR4 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VSX1Q9NZR4 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VSX1Q9NZR4 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VSX1Q9NZR4 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VSX1Q9NZR4 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VSX1Q9NZR4 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 AC024257.2-201ENST00000549699 147 ntBASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms