Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
UPF3AQ9H1J1 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
UPF3AQ9H1J1 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
UPF3AQ9H1J1 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
UPF3AQ9H1J1 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.42
UPF3AQ9H1J1 BMP1-204ENST00000397814 836 ntTSL 4 BASIC23.95■■□□□ 1.42
UPF3AQ9H1J1 BET1L-204ENST00000410108 637 ntTSL 3 BASIC23.95■■□□□ 1.42
UPF3AQ9H1J1 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.95■■□□□ 1.42
UPF3AQ9H1J1 MIPEPP3-201ENST00000412105 444 ntBASIC23.95■■□□□ 1.42
UPF3AQ9H1J1 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.95■■□□□ 1.42
UPF3AQ9H1J1 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
UPF3AQ9H1J1 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC23.95■■□□□ 1.42
UPF3AQ9H1J1 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC23.95■■□□□ 1.42
UPF3AQ9H1J1 AP006587.3-201ENST00000525742 1516 ntBASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 OR10C1-204ENST00000622521 1039 ntBASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
UPF3AQ9H1J1 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 POU5F1P3-201ENST00000428824 1078 ntBASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 MKRN4P-201ENST00000444706 1521 ntBASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
UPF3AQ9H1J1 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
UPF3AQ9H1J1 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
UPF3AQ9H1J1 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
UPF3AQ9H1J1 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC23.92■■□□□ 1.42
UPF3AQ9H1J1 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
UPF3AQ9H1J1 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.92■■□□□ 1.42
UPF3AQ9H1J1 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
UPF3AQ9H1J1 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC23.92■■□□□ 1.42
UPF3AQ9H1J1 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
UPF3AQ9H1J1 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
UPF3AQ9H1J1 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
UPF3AQ9H1J1 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
UPF3AQ9H1J1 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC23.91■■□□□ 1.42
UPF3AQ9H1J1 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.91■■□□□ 1.42
UPF3AQ9H1J1 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC23.91■■□□□ 1.42
UPF3AQ9H1J1 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.91■■□□□ 1.42
UPF3AQ9H1J1 AC008687.6-201ENST00000596318 630 ntBASIC23.91■■□□□ 1.42
UPF3AQ9H1J1 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.91■■□□□ 1.42
UPF3AQ9H1J1 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.91■■□□□ 1.42
UPF3AQ9H1J1 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
UPF3AQ9H1J1 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
UPF3AQ9H1J1 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
UPF3AQ9H1J1 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.9■■□□□ 1.42
UPF3AQ9H1J1 AL512625.2-201ENST00000417533 625 ntBASIC23.9■■□□□ 1.42
UPF3AQ9H1J1 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
UPF3AQ9H1J1 AC092118.2-201ENST00000613495 667 ntBASIC23.9■■□□□ 1.42
UPF3AQ9H1J1 ITM2C-210ENST00000620962 501 ntBASIC23.9■■□□□ 1.42
UPF3AQ9H1J1 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.9■■□□□ 1.42
UPF3AQ9H1J1 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC23.9■■□□□ 1.42
UPF3AQ9H1J1 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
UPF3AQ9H1J1 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
UPF3AQ9H1J1 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
UPF3AQ9H1J1 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
UPF3AQ9H1J1 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
UPF3AQ9H1J1 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.41
UPF3AQ9H1J1 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
UPF3AQ9H1J1 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms