Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VMP1Q96GC9 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VMP1Q96GC9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VMP1Q96GC9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VMP1Q96GC9 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
VMP1Q96GC9 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VMP1Q96GC9 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
VMP1Q96GC9 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.37■□□□□ 0.85
VMP1Q96GC9 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VMP1Q96GC9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.37■□□□□ 0.85
VMP1Q96GC9 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VMP1Q96GC9 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.37■□□□□ 0.85
VMP1Q96GC9 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VMP1Q96GC9 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
VMP1Q96GC9 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VMP1Q96GC9 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VMP1Q96GC9 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VMP1Q96GC9 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.36■□□□□ 0.85
VMP1Q96GC9 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VMP1Q96GC9 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
VMP1Q96GC9 MIR572-201ENST00000384983 95 ntBASIC20.36■□□□□ 0.85
VMP1Q96GC9 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VMP1Q96GC9 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.36■□□□□ 0.85
VMP1Q96GC9 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VMP1Q96GC9 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.36■□□□□ 0.85
VMP1Q96GC9 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.36■□□□□ 0.85
VMP1Q96GC9 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
VMP1Q96GC9 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VMP1Q96GC9 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VMP1Q96GC9 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VMP1Q96GC9 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.35■□□□□ 0.85
VMP1Q96GC9 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.35■□□□□ 0.85
VMP1Q96GC9 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VMP1Q96GC9 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VMP1Q96GC9 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.35■□□□□ 0.85
VMP1Q96GC9 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VMP1Q96GC9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VMP1Q96GC9 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VMP1Q96GC9 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
VMP1Q96GC9 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VMP1Q96GC9 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.34■□□□□ 0.85
VMP1Q96GC9 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
VMP1Q96GC9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VMP1Q96GC9 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.34■□□□□ 0.85
VMP1Q96GC9 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
VMP1Q96GC9 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VMP1Q96GC9 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VMP1Q96GC9 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.34■□□□□ 0.85
VMP1Q96GC9 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VMP1Q96GC9 AC010141.3-201ENST00000456659 717 ntBASIC20.34■□□□□ 0.85
VMP1Q96GC9 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.34■□□□□ 0.85
VMP1Q96GC9 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.34■□□□□ 0.85
VMP1Q96GC9 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
VMP1Q96GC9 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VMP1Q96GC9 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VMP1Q96GC9 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VMP1Q96GC9 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
VMP1Q96GC9 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.33■□□□□ 0.85
VMP1Q96GC9 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VMP1Q96GC9 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VMP1Q96GC9 AC073130.3-201ENST00000624389 2278 ntBASIC20.33■□□□□ 0.85
VMP1Q96GC9 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VMP1Q96GC9 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VMP1Q96GC9 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VMP1Q96GC9 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VMP1Q96GC9 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VMP1Q96GC9 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.33■□□□□ 0.85
VMP1Q96GC9 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VMP1Q96GC9 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VMP1Q96GC9 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VMP1Q96GC9 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
VMP1Q96GC9 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.33■□□□□ 0.84
VMP1Q96GC9 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.33■□□□□ 0.84
VMP1Q96GC9 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VMP1Q96GC9 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VMP1Q96GC9 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
VMP1Q96GC9 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.32■□□□□ 0.84
VMP1Q96GC9 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.32■□□□□ 0.84
VMP1Q96GC9 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.32■□□□□ 0.84
VMP1Q96GC9 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VMP1Q96GC9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.32■□□□□ 0.84
VMP1Q96GC9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.32■□□□□ 0.84
VMP1Q96GC9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.32■□□□□ 0.84
VMP1Q96GC9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VMP1Q96GC9 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.32■□□□□ 0.84
VMP1Q96GC9 AL358852.1-201ENST00000623174 1268 ntBASIC20.32■□□□□ 0.84
VMP1Q96GC9 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VMP1Q96GC9 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
VMP1Q96GC9 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VMP1Q96GC9 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VMP1Q96GC9 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VMP1Q96GC9 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VMP1Q96GC9 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VMP1Q96GC9 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.31■□□□□ 0.84
VMP1Q96GC9 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VMP1Q96GC9 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VMP1Q96GC9 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.31■□□□□ 0.84
VMP1Q96GC9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.31■□□□□ 0.84
VMP1Q96GC9 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
VMP1Q96GC9 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms