Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 AC069152.1-201ENST00000438030 544 ntBASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 EEF1DP3-203ENST00000566025 782 ntBASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
USHBP1Q8N6Y0 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
USHBP1Q8N6Y0 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
USHBP1Q8N6Y0 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
USHBP1Q8N6Y0 AC087742.1-201ENST00000575880 1738 ntBASIC28.4■■■□□ 2.14
USHBP1Q8N6Y0 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
USHBP1Q8N6Y0 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
USHBP1Q8N6Y0 AC137767.1-201ENST00000602918 1920 ntBASIC28.4■■■□□ 2.14
USHBP1Q8N6Y0 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC28.4■■■□□ 2.14
USHBP1Q8N6Y0 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
USHBP1Q8N6Y0 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
USHBP1Q8N6Y0 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC28.4■■■□□ 2.14
USHBP1Q8N6Y0 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC28.4■■■□□ 2.14
USHBP1Q8N6Y0 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC28.4■■■□□ 2.14
USHBP1Q8N6Y0 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.14
USHBP1Q8N6Y0 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC28.39■■■□□ 2.14
USHBP1Q8N6Y0 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
USHBP1Q8N6Y0 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
USHBP1Q8N6Y0 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC28.39■■■□□ 2.14
USHBP1Q8N6Y0 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC28.39■■■□□ 2.14
USHBP1Q8N6Y0 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC28.39■■■□□ 2.14
USHBP1Q8N6Y0 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
USHBP1Q8N6Y0 KRT18P20-201ENST00000548986 1279 ntBASIC28.39■■■□□ 2.14
USHBP1Q8N6Y0 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
USHBP1Q8N6Y0 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
USHBP1Q8N6Y0 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
USHBP1Q8N6Y0 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
USHBP1Q8N6Y0 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC28.38■■■□□ 2.13
USHBP1Q8N6Y0 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC28.38■■■□□ 2.13
USHBP1Q8N6Y0 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
USHBP1Q8N6Y0 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC28.38■■■□□ 2.13
USHBP1Q8N6Y0 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC28.38■■■□□ 2.13
USHBP1Q8N6Y0 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC28.38■■■□□ 2.13
USHBP1Q8N6Y0 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC28.38■■■□□ 2.13
USHBP1Q8N6Y0 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 COMT-203ENST00000403184 2217 ntTSL 2 BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 AC133552.2-202ENST00000575694 574 ntBASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
USHBP1Q8N6Y0 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC28.36■■■□□ 2.13
USHBP1Q8N6Y0 AC068338.2-201ENST00000563278 1430 ntBASIC28.36■■■□□ 2.13
USHBP1Q8N6Y0 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
USHBP1Q8N6Y0 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
USHBP1Q8N6Y0 CYP2T1P-201ENST00000432607 1285 ntBASIC28.36■■■□□ 2.13
USHBP1Q8N6Y0 TERF1P5-201ENST00000477545 1207 ntBASIC28.36■■■□□ 2.13
USHBP1Q8N6Y0 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC28.36■■■□□ 2.13
USHBP1Q8N6Y0 PLLP-204ENST00000569059 665 ntTSL 3 BASIC28.36■■■□□ 2.13
USHBP1Q8N6Y0 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
USHBP1Q8N6Y0 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC28.35■■■□□ 2.13
USHBP1Q8N6Y0 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC28.35■■■□□ 2.13
USHBP1Q8N6Y0 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC28.35■■■□□ 2.13
USHBP1Q8N6Y0 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC28.35■■■□□ 2.13
USHBP1Q8N6Y0 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
USHBP1Q8N6Y0 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC28.35■■■□□ 2.13
USHBP1Q8N6Y0 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC28.35■■■□□ 2.13
USHBP1Q8N6Y0 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC28.35■■■□□ 2.13
USHBP1Q8N6Y0 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
USHBP1Q8N6Y0 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
USHBP1Q8N6Y0 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
USHBP1Q8N6Y0 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
USHBP1Q8N6Y0 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 AL034346.1-201ENST00000568244 1277 ntBASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 AC053503.5-201ENST00000601508 636 ntBASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
USHBP1Q8N6Y0 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
USHBP1Q8N6Y0 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC28.33■■■□□ 2.13
USHBP1Q8N6Y0 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms