Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 MIR639-201ENST00000384974 98 ntBASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC28AQ8IWP9 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC28AQ8IWP9 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 TPT1-202ENST00000379055 948 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC28AQ8IWP9 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 AC020916.1-201ENST00000587762 1774 ntBASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC28AQ8IWP9 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC28AQ8IWP9 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms